PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400004168
Common NameLOC102580153
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GATA
Protein Properties Length: 168aa    MW: 17868.5 Da    PI: 9.3761
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400004168genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.32.5e-196093134
                  GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                          C+ Cg++kTplWR+gp g+k+LCnaCG++ rkk+
  PGSC0003DMP400004168 60 CVDCGAIKTPLWRSGPAGPKSLCNACGIRSRKKK 93
                          ********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.7E-1354104IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.115490IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.57E-125694No hitNo description
Gene3DG3DSA:3.30.50.106.2E-165894IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.60E-145994No hitNo description
PROSITE patternPS0034406085IPR000679Zinc finger, GATA-type
PfamPF003206.7E-176094IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MDLSDKVMGS EEVITGLAME IATPEVISSE IQVKAAEVIS SEIQVKTPEV ISSEIQQKTC  60
VDCGAIKTPL WRSGPAGPKS LCNACGIRSR KKKRDLLGLN KDDKKTKKSS ANSASSSGDS  120
ASSSNVEKKK KAPVKRADSI SLHWSKLDEV ERAAFLLMSL SCSSVRA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400004168
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363584.11e-115PREDICTED: GATA transcription factor 15-like
RefseqXP_006363585.11e-115PREDICTED: GATA transcription factor 15-like
TrEMBLM0ZQP51e-114M0ZQP5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000060111e-115(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19992362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.11e-18GATA transcription factor 16
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]