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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400003676 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | bHLH | ||||||||
Protein Properties | Length: 259aa MW: 29566.4 Da PI: 5.2087 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.2 | 4.1e-10 | 173 | 215 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N +++ Lr+++Pk + K++ +iL +++Y k+L PGSC0003DMP400003676 173 MAERRRRKRLNGRLSMLRSIVPKiS------KMDRTSILGDTIDYTKEL 215 79*********************66......**************8876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.405 | 166 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.09E-14 | 170 | 235 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-10 | 172 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.8E-8 | 173 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.0E-14 | 173 | 228 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MEDYYRENEF LLDELFALRS DLWESTCLPM EINSSSSNLY SNNINYDCFG EIPLPSTTTT 60 TTTTSFEDYY NNFPIDQSQN YSLLHSEFYS TQKVDVLSPL ELTNSFNSPF TSQLEDFSSI 120 YFDVGNFGDC KLERTQSTAS SAAIAPANFN IGVCLDKKAK TKKVNGEPSK NLMAERRRRK 180 RLNGRLSMLR SIVPKISKMD RTSILGDTID YTKELLEKIN NLQQEMKLGS NQLSLMSIFK 240 NEKPIEMFVR NSPKRCVI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 174 | 181 | ERRRRKRL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400003676 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 0.0 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015060938.1 | 1e-156 | transcription factor bHLH93-like | ||||
TrEMBL | M0ZPM3 | 0.0 | M0ZPM3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400005209 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA789 | 24 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.2 | 1e-30 | beta HLH protein 93 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400003676 |
Publications ? help Back to Top | |||
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