PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400003167
Common NameLOC102588755
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family S1Fa-like
Protein Properties Length: 81aa    MW: 8988.8 Da    PI: 10.5211
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400003167genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA135.51.3e-421480470
                  S1FA  4 akveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                          + ve+kG+nPGlivl+vvgglll+fl+gny+ly+yaqk+lPP+kkkPvskkk+k+e+lkqGv++PGe
  PGSC0003DMP400003167 14 KDVEVKGFNPGLIVLIVVGGLLLTFLIGNYLLYMYAQKTLPPKKKKPVSKKKMKKERLKQGVSAPGE 80
                          679***************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0190130.0081580No hitNo description
PfamPF046894.4E-411680IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
MDFENHDNVK NMAKDVEVKG FNPGLIVLIV VGGLLLTFLI GNYLLYMYAQ KTLPPKKKKP  60
VSKKKMKKER LKQGVSAPGE *
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400003167
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2329351e-108AC232935.1 Solanum lycopersicum chromosome 9 clone C09HBa0067J16, complete sequence.
GenBankHG9755211e-108HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006361797.16e-51PREDICTED: DNA-binding protein S1FA-like
SwissprotQ423373e-16S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBLM0ZNG11e-49M0ZNG1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000044412e-50(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31742249
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]