PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400002986
Common NameLOC102598221
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 578aa    MW: 63252 Da    PI: 7.3512
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400002986genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.64e-11421479563
                           CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                           kr++r   NR +A rs +RK  +i+eLe kv++L++e ++L  +l  l+  +  l+s++
  PGSC0003DMP400002986 421 KRAKRILANRQSAARSKERKMRYIAELEHKVQTLQTEATTLSAQLTLLQRDATGLTSQN 479
                           9************************************************9999999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.4E-18417481IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.898419482IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.27E-11421476No hitNo description
Gene3DG3DSA:1.20.5.1702.4E-11421478No hitNo description
PfamPF001702.1E-9421479IPR004827Basic-leucine zipper domain
CDDcd147035.01E-24422471No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MAGDNDEGNS DMVQRLQSSF GTSSSSLPKQ LQPISMNQLD IPQLTTSQFR GQMRQFSPNF  60
GVENSKRVGI PPSHPQMPPI SPYSQIPVTR PGNQQMGMQN FTSAGPSHSR SLSQPAFFSL  120
DSLPPLSPSP YRESPSTSMS DPISADVSMG DQDGNSHSLL PPTPFSRCNS SRAGESLPPR  180
KAHRRSNSDI PFGFSAIMQS SPPLVPLRSP GALERSFPSR DNSGGKPVQL VKRESMWERG  240
NDYNNVEGMG ERKSEGEVVD DLFSAYMNLD NIDAFNSSGT DEKLGIENRE DLDSRASGTK  300
TNGGDSSDNE ATSSVNDSSS GSMQKREGVK RSAVADIAPT TRHYRSVSMD SFMGKLNFID  360
DSPKLPPSPG PRPGQLSPTN SLDGNSNSFS LEFGNGEFSG AELKKIMANE KLAEIALADP  420
KRAKRILANR QSAARSKERK MRYIAELEHK VQTLQTEATT LSAQLTLLQR DATGLTSQNS  480
ELKFRLQAME QQAQLRDALN EALTAEVQRL KIATAELSAD ASKFQQLSLN PQMFQSQQQQ  540
SNQLNMHQLQ QQQQQQQQHA QARQQLNSST TSKHESK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400002986
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0145760.0BT014576.1 Lycopersicon esculentum clone 134031F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006359608.10.0PREDICTED: transcription factor RF2a
TrEMBLM0ZN090.0M0ZN09_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000041780.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12652478
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.31e-140bZIP family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]