PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400002736
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 374aa    MW: 43127.5 Da    PI: 5.2242
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400002736genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.0001292115123
                           EEETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                           y C+ Cg+ ++++++Lk+H +  H
  PGSC0003DMP400002736  92 YICSVCGRKCKTHMDLKKHFKQlH 115
                           89*****************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10103.1E-61282IPR029060PIN domain-like
PROSITE profilePS5015711.07492120IPR007087Zinc finger, C2H2
PROSITE patternPS00028094115IPR007087Zinc finger, C2H2
CDDcd061672.22E-11106246No hitNo description
Gene3DG3DSA:3.40.50.10103.1E-6177244IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MERTKQGLYT AKPKKVVILW DLDNKPPRGP PYEAAMSLKR VAQCFGEVVD MSAYANRHAF  60
IHLPQWVVEE RRERRHLDVL ERKGVVTPSE LYICSVCGRK CKTHMDLKKH FKQLHERERE  120
KKLSRMRSLK GKKRQRFKER FVDGNYKYIE AAKSLITPKV GYGLASELRR AGVYVKTVAD  180
KPQAADWALK KQMQHSMSRG IDWLFLISDD SDFCDMLRRA KEANLGTVVV GDWDRALGRH  240
ADLWVPWNGV ENGEITEKDL VLKSERRRES WDRSNAQFSV SEFNGGIREE GTSLGSLMDD  300
IVEKLESSGT RISAFSEGEE DEEVEELDEE DWLRARLDQR SDDEYNTEDS IVSDEEEGDY  360
LLDSEDEDTG EIL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400002736
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340838.10.0PREDICTED: uncharacterized protein LOC102594826
TrEMBLM0ZME30.0M0ZME3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000038440.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122681518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-153C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]