 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
PGSC0003DMP400002557 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 240aa MW: 27264.2 Da PI: 6.6317 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PGSC0003DMP400002557 | genome | PGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 59.1 | 7.5e-19 | 24 | 77 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+++++ eq+++Le+ Fe ++++ e++ +LA+ lgL+ rq+ +WFqNrRa++k
PGSC0003DMP400002557 24 KKRRLNMEQVKALERSFEVANKLDPERKIQLARALGLQPRQIAIWFQNRRARWK 77
456899***********************************************9 PP
|
| 2 | HD-ZIP_I/II | 131.2 | 4.1e-42 | 23 | 114 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89
ekkrrl+ eqvk+LE+sFe +kL+perK +lar+Lglqprq+a+WFqnrRAR+ktkqlEkdye+Lkr++d+lk++n++L+++++eL++
PGSC0003DMP400002557 23 EKKRRLNMEQVKALERSFEVANKLDPERKIQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYEMLKRHFDSLKTDNDALKAQNKELHS 111
69*************************************************************************************** PP
HD-ZIP_I/II 90 elk 92
el+
PGSC0003DMP400002557 112 ELQ 114
997 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 240 aa
Download sequence Send
to blast |
MSFSGVEDNE MSDDDGSSQL LGEKKRRLNM EQVKALERSF EVANKLDPER KIQLARALGL 60
QPRQIAIWFQ NRRARWKTKQ LEKDYEMLKR HFDSLKTDND ALKAQNKELH SELQLLSVKK 120
RESSGGGAIM FNLNKENEGC WSNNGSDDNN NNSIDVNLGT RTSSGDSPFY SKNVFPSGPG 180
PVPLAKFLQS SSTPPDHLNH CNKNNNIDPT VQHEGFCNMF TPVDDHTNFW PWPEQQHFN*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT012922 | 0.0 | BT012922.1 Lycopersicon esculentum clone 114085R, mRNA sequence. |
