PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400002480 | ||||||||
Common Name | LOC102598421 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | MYB | ||||||||
Protein Properties | Length: 239aa MW: 27720.2 Da PI: 7.5497 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 65.3 | 1.2e-20 | 19 | 66 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ll ++v+++G g+W++++r+ g++Rt+k+c++rw +yl PGSC0003DMP400002480 19 KGPWTPEEDKLLSEYVNLHGEGRWSSVSRCAGLNRTGKSCRLRWVNYL 66 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.5 | 2.3e-16 | 72 | 116 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T++E+ +++++++++G++ W+tIar+++ gRt++++k++w+++ PGSC0003DMP400002480 72 RGHITPQEEGIIIELHALWGNK-WSTIARYLP-GRTDNEIKNYWRTH 116 6778******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.796 | 14 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.26E-32 | 16 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-17 | 18 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.9E-19 | 19 | 66 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-24 | 20 | 73 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.07E-13 | 21 | 66 | No hit | No description |
PROSITE profile | PS51294 | 24.799 | 67 | 121 | IPR017930 | Myb domain |
SMART | SM00717 | 3.0E-14 | 71 | 119 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-14 | 72 | 116 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-24 | 74 | 121 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.36E-10 | 76 | 117 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MVRGMMGWGA NSDEQGWRKG PWTPEEDKLL SEYVNLHGEG RWSSVSRCAG LNRTGKSCRL 60 RWVNYLRPGL KRGHITPQEE GIIIELHALW GNKWSTIARY LPGRTDNEIK NYWRTHFKTK 120 VVKQDKKKIM RQMRNHPQQN YTRTDKKIMS SEAEEVIMIK SDDDNMFISS TNNYDEDPVV 180 ELPPVTTSSD TSYTWTETFP MDELWGGLWN IDDEFKVAIQ NQPNCSYAVN LYNGGFIF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-25 | 19 | 121 | 7 | 108 | B-MYB |
1h8a_C | 8e-25 | 19 | 121 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00388 | DAP | Transfer from AT3G30210 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400002480 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 3e-67 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006338764.1 | 1e-180 | PREDICTED: myb-related protein 340 | ||||
TrEMBL | M0ZLR9 | 1e-178 | M0ZLR9_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400003479 | 1e-179 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G30210.1 | 4e-72 | myb domain protein 121 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400002480 |
Entrez Gene | 102598421 |
Publications ? help Back to Top | |||
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