PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400002142
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 599aa    MW: 65258.6 Da    PI: 6.1594
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400002142genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.4e-12425470454
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  PGSC0003DMP400002142 425 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAIAYINEL 470
                           799***********************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.5E-569198IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.111421470IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-18424494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.65E-14424475No hitNo description
PfamPF000104.9E-10425470IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-18425491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-16427476IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MPFFNQESLQ QRLQALIDGA RESWAYAIFW QSSSTSDFAT PSVLGWGDGY YKGEENKNKR  60
RASSSSANFV AEQEHRKKVL RELNSLISGV QAAGAGSGGD DAVDEEVTDT EWFFLISMTQ  120
SFANGNGLPG LAMYSSSPIW VTGTEKLAGS QCERARQAQG FGLQTIVCIP SANGVVELGS  180
TELIFESSDL MNKVKYLFNF NIDMGSVTGS GSGSCAVHPE TDPSALWLTD PSSSVVEAKD  240
SLINSSSRDV QLVFVNENSE NGTQNQQHSQ QTQGFFTKEL NFSGYGFDGS STRNKNGNSS  300
ISCKPETREI LNFGDSSKRS GSLFSGQSQF GPGTGLGLME ENKNKNNNNN KKRSLASRGN  360
NEEGMLSFVS GVILPTSTMG KSGGGGDSDH SDLEASVVKE AIVEPEKKPR KRGRKPANGR  420
EEPLNHVEAE RQRREKLNQR FYALRAVVPN VSKMDKASLL GDAIAYINEL KSKVQNSDLD  480
KEELRSQIES LRKELANKGS SNYSSSPPSN QDLKIVDMDI DVKVIGWDAM IRIQCSKKNH  540
PAARLMAALK DLDLDVHHAS VSVVNDLMIQ QATVKMGSRL YAQEQLTIAL TSKFAESR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A6e-6922012195Transcription factor MYC3
4rqw_B6e-6922012195Transcription factor MYC3
4rs9_A6e-6922012195Transcription factor MYC3
4yz6_A6e-6922012195Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1406414KKPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-AACGTG-3') found in a number of promoters of jasmonate-induced genes (PubMed:15231736). Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:30518626). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). Acts synergistically with EOT1 in the transactivation of TPS5 (PubMed:24884371). Involved in type VI glandular trichome development (PubMed:30518626). Involved in the activation of terpene synthases required for volatile mono- and sesquiterpenes synthesis by the glandular cells of type VI trichomes (PubMed:30518626). {ECO:0000269|PubMed:15231736, ECO:0000269|PubMed:24884371, ECO:0000269|PubMed:30518626}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400002142
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by methyl jasmonate and wounding. {ECO:0000269|PubMed:15231736}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6305060.0AJ630506.1 Solanum tuberosum partial mRNA for MYC transcription factor (jamyc10 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006366244.10.0PREDICTED: transcription factor MYC4-like
SwissprotA0A060KY900.0MYC1_SOLLC; Transcription factor MYC1
TrEMBLM0ZKY60.0M0ZKY6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000029630.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33002449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.11e-164bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  3. Spyropoulou EA,Haring MA,Schuurink RC
    RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
    BMC Genomics, 2014. 15: p. 402
    [PMID:24884371]
  4. Xu J, et al.
    SlMYC1 Regulates Type VI Glandular Trichome Formation and Terpene Biosynthesis in Tomato Glandular Cells.
    Plant Cell, 2018. 30(12): p. 2988-3005
    [PMID:30518626]