PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400002114 | ||||||||
Common Name | LOC102581248 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 177aa MW: 20313.6 Da PI: 10.001 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 55 | 1e-17 | 12 | 60 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ++i+nk +r vtfskRr+g++KK ELS LCd ++ifs+++k y PGSC0003DMP400002114 12 EKIQNKKKRDVTFSKRRTGLFKKETELSALCDSPSVMVIFSPENKSTVY 60 579***************************************9986655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.1E-19 | 4 | 63 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 21.334 | 4 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.4E-21 | 5 | 82 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-16 | 6 | 26 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.7E-19 | 13 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-16 | 26 | 41 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-16 | 41 | 62 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MARSGRKKIR IEKIQNKKKR DVTFSKRRTG LFKKETELSA LCDSPSVMVI FSPENKSTVY 60 SIGYPSVNSI MDKFMKVNPP TNIDDTNSLT VHRKIAIRKV GLELIEINRK LEEEEKRKKR 120 LDTTGSSYEN LNSMQYQQLI ENIEIKFLET ECIAIQLKEC NMPFPYSTFG DALAPK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 5 | 19 | RKKIRIEKIQNKKKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400002114 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006340411.1 | 1e-127 | PREDICTED: agamous-like MADS-box protein AGL29 | ||||
TrEMBL | M0ZKW1 | 1e-126 | M0ZKW1_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400002920 | 1e-126 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA204 | 24 | 223 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 2e-19 | AGAMOUS-like 29 |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400002114 |
Entrez Gene | 102581248 |
Publications ? help Back to Top | |||
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