![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PGSC0003DMP400001893 | ||||||||
Common Name | LOC102600262 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 362aa MW: 41276.3 Da PI: 9.5413 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.1 | 1.5e-05 | 119 | 142 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C Cg++F +++ L++H + H PGSC0003DMP400001893 119 YICRVCGRRFYTNEKLVNHFKQiH 142 89*****************98766 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.61E-5 | 115 | 145 | No hit | No description |
SMART | SM00355 | 0.0055 | 119 | 142 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.196 | 119 | 147 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 121 | 142 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.40.50.1010 | 1.3E-7 | 121 | 168 | IPR029060 | PIN domain-like |
CDD | cd06167 | 2.81E-12 | 185 | 271 | No hit | No description |
Pfam | PF01936 | 1.8E-8 | 191 | 272 | IPR021139 | NYN domain, limkain-b1-type |
Gene3D | G3DSA:3.40.50.1010 | 1.3E-7 | 204 | 276 | IPR029060 | PIN domain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 362 aa Download sequence Send to blast |
MMNCVKVSSF IHAICSYKRF CHFESKSHLG FGSLDSPIRA SVGIFWDLDN KPPKSFPPFD 60 AATKLKKAAG QFGVVRFTVA YANRHAFSYV PPLVRQQRKE RKTLNLLEKS GVVKVEDPYI 120 CRVCGRRFYT NEKLVNHFKQ IHEREQTKRL NQIESARGKM RVKLVAKYAM KMDKYKGAVR 180 DVLTPKVGYG LADDLKRAGF WVRTVSDKPQ AADVALRNHL VDVMDKRMVD YVVLVSDDSD 240 FVEVLKEARL RCLKTVVVGD SNDGALKRTA DAAFSWQEIM MGKAKKEAVS VVGRWKDRDV 300 LKRLEWTYDP EVEKKLYYSE VESDDSDGIF SGEDDKEDVD ASISKEDAHA WWKLDSRSGH 360 D* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | PGSC0003DMP400001893 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975450 | 0.0 | HG975450.1 Solanum pennellii chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006350944.1 | 0.0 | PREDICTED: uncharacterized protein LOC102600262 isoform X2 | ||||
TrEMBL | M0ZKC8 | 0.0 | M0ZKC8_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400002602 | 0.0 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G12240.1 | 1e-135 | C2H2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | PGSC0003DMP400001893 |
Entrez Gene | 102600262 |
Publications ? help Back to Top | |||
---|---|---|---|
|