PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400001892
Common NameLOC102600262
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 362aa    MW: 41276.3 Da    PI: 9.5413
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400001892genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-05119142123
                           EEETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                           y C  Cg++F +++ L++H +  H
  PGSC0003DMP400001892 119 YICRVCGRRFYTNEKLVNHFKQiH 142
                           89*****************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.61E-5115145No hitNo description
SMARTSM003550.0055119142IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.196119147IPR007087Zinc finger, C2H2
PROSITE patternPS000280121142IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.40.50.10101.3E-7121168IPR029060PIN domain-like
CDDcd061672.81E-12185271No hitNo description
PfamPF019361.8E-8191272IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10101.3E-7204276IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MMNCVKVSSF IHAICSYKRF CHFESKSHLG FGSLDSPIRA SVGIFWDLDN KPPKSFPPFD  60
AATKLKKAAG QFGVVRFTVA YANRHAFSYV PPLVRQQRKE RKTLNLLEKS GVVKVEDPYI  120
CRVCGRRFYT NEKLVNHFKQ IHEREQTKRL NQIESARGKM RVKLVAKYAM KMDKYKGAVR  180
DVLTPKVGYG LADDLKRAGF WVRTVSDKPQ AADVALRNHL VDVMDKRMVD YVVLVSDDSD  240
FVEVLKEARL RCLKTVVVGD SNDGALKRTA DAAFSWQEIM MGKAKKEAVS VVGRWKDRDV  300
LKRLEWTYDP EVEKKLYYSE VESDDSDGIF SGEDDKEDVD ASISKEDAHA WWKLDSRSGH  360
D*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400001892
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754500.0HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006350944.10.0PREDICTED: uncharacterized protein LOC102600262 isoform X2
TrEMBLM0ZKC80.0M0ZKC8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000026020.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA121251920
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-135C2H2 family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]