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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
PGSC0003DMP400001648 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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| Family |
HD-ZIP |
| Protein Properties |
Length: 236aa MW: 27361.7 Da PI: 6.5876 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PGSC0003DMP400001648 | genome | PGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 57.3 | 2.7e-18 | 68 | 119 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
++++ eq+++Le+ Fe +++ ae++ +LA+ lgL+ rqV +WFqNrRa++k
PGSC0003DMP400001648 68 RRLNMEQVKTLEKNFELGNKLEAERKVQLARALGLQPRQVAIWFQNRRARWK 119
57899**********************************************9 PP
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| 2 | HD-ZIP_I/II | 123.2 | 1.3e-39 | 66 | 156 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90
k rrl+ eqvk+LE++Fe +kLe erKv+lar+Lglqprqva+WFqnrRAR+ktkqlEkdy++Lkr++da+k++ne+L +++++L+ e
PGSC0003DMP400001648 66 KIRRLNMEQVKTLEKNFELGNKLEAERKVQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDVLKREFDAIKAQNEALLAHNHKLHVE 154
669***********************************************************************************998 PP
HD-ZIP_I/II 91 lk 92
++
PGSC0003DMP400001648 155 IM 156
87 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 236 aa
Download sequence Send
to blast |
MDFFPTNFML HTPHEDNHQD FHGVTSFLEK KSMSFSNKCD DQNHGDQEDV LSDDGTHHEA 60
ILREKKIRRL NMEQVKTLEK NFELGNKLEA ERKVQLARAL GLQPRQVAIW FQNRRARWKT 120
KQLEKDYDVL KREFDAIKAQ NEALLAHNHK LHVEIMTLKN GKGPTESINL NKETDQGSIC 180
STRSENSSEI IKLQCNNMKL MDQTVKEETL SNIFSGIDDN SAGFWPWLDQ QPHFN*
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| Nucleic Localization
Signal ? help
Back to Top |
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| No. |
Start |
End |
Sequence |
| 1 | 113 | 121 | RRARWKTKQ |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
| Publications
? help Back to Top |
- Xu X, et al.
Genome sequence and analysis of the tuber crop potato.
Nature, 2011. 475(7355): p. 189-95
[PMID:21743474] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Ribone PA,Capella M,Chan RL
Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
J. Exp. Bot., 2015. 66(19): p. 5929-43
[PMID:26136262] - Wang X, et al.
Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
Sci China Life Sci, 2018. 61(1): p. 79-87
[PMID:28887625] - Ebrahimian-Motlagh S, et al.
JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
Front Plant Sci, 2017. 8: p. 2118
[PMID:29326734]
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