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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
PGSC0003DMP400001570 |
Common Name | LOC102582354 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
bHLH |
Protein Properties |
Length: 313aa MW: 34997.4 Da PI: 6.4452 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
PGSC0003DMP400001570 | genome | PGSC | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 44.4 | 3e-14 | 111 | 157 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L
PGSC0003DMP400001570 111 KSHSEAERRRRERINNHLAKLRSLLPNT-----TKTDKASLLAEVIQHVKEL 157
79*************************9.....8****************99 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 313 aa
Download sequence Send
to blast |
MHPQSFMNPV HFQSNSEMLP WSIPPVQPYL NPVHHHDQSF LLPPSPSAYG LFNRNTTMDQ 60 QHLRFISDSL VGQVVHHHNQ PGSIAPFGLQ AELQKMSAQE IMDAKALAAS KSHSEAERRR 120 RERINNHLAK LRSLLPNTTK TDKASLLAEV IQHVKELKRQ TSLISETSLV PTEIDELTVD 180 NATSDEDGKF LIKASLCCED RSDLLPDLIK TLKALRLKTL KAEITTLGGR VRNVLFITGD 240 DYYCDDSNNN RDHIDPCTSG DDEDTQMMQQ QPQYCISSIQ EALKAVMEKS SGDDSASTSV 300 KRQRTNSINI LS*
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Publications
? help Back to Top |
- Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] - Xu X, et al.
Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] - Ohashi-Ito K, et al.
A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] - Katayama H, et al.
A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]
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