 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
PGSC0003DMP400001390 |
| Common Name | LOC102589204 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
| Family |
bHLH |
| Protein Properties |
Length: 443aa MW: 49692.4 Da PI: 5.824 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PGSC0003DMP400001390 | genome | PGSC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 28.4 | 3e-09 | 247 | 294 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq
PGSC0003DMP400001390 247 SHSLAERVRREKISERMRFLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 294
8**************************....999*****************9 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006351 | Biological Process | transcription, DNA-templated |
| GO:0009637 | Biological Process | response to blue light |
| GO:0009911 | Biological Process | positive regulation of flower development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 443 aa
Download sequence Send
to blast |
MNIALPEMLH NNTTSNGGNG SSVLERQPAR MKWHQEQVQQ QEMSYFNGQN DQLMSSFHQT 60
SEAQQFHGLI NVNDQSLNEL VTRAIKPDPC MENNWDDFGT TDNNGFGYVP VGVGHGGMSH 120
PTEMNYAISR TTSCPPTMAD NAVKSKETML SSNRGSENFK KRKADKNQHL KEVAEEETKD 180
KKLKECIEEG DDSSKVTTEK KSNKRSANNS SNSKENSDTS KEKSKITDDK KLDYIHVRAR 240
RGQATDSHSL AERVRREKIS ERMRFLQDLV PGCNKITGKA GMLDEIINYV QSLQRQVEFL 300
SMKLAAVNPR LDIDVDNFFN KDIFATSTST FSTVGAGTSS EMLSMAQRQF NSLQQIMSSS 360
GLEMDILNLN EMALRRTTSA PVPIPEMFLD SSSINQVQSF QTWDTDLDNM YAMELQQGRS 420
AQFFPHPCTG FAEAGHDLKM EM*
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT014300 | 0.0 | BT014300.1 Lycopersicon esculentum clone 133550R, mRNA sequence. |
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT4G34530.1 | 2e-56 | cryptochrome-interacting basic-helix-loop-helix 1 |
