PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400000611
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family CPP
Protein Properties Length: 438aa    MW: 47682.7 Da    PI: 7.3271
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400000611genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR46.19.6e-152362242
                   TCR  2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42
                          ++k+CnCk+s+Clk+YCeCfa+g++C+  C+C++C+N+ e+
  PGSC0003DMP400000611 23 KQKQCNCKHSRCLKLYCECFASGVYCDG-CNCNNCHNNVEN 62
                          89**************************.********9875 PP
2TCR51.42.1e-16107146140
                   TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                           k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  PGSC0003DMP400000611 107 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 146
                           589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011147.1E-162262IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.93223147IPR005172CRC domain
PfamPF036381.3E-112459IPR005172CRC domain
SMARTSM011148.4E-20107148IPR033467Tesmin/TSO1-like CXC domain
PfamPF036387.8E-13110145IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
KPESPRARPR QSASEVKDGT PKKQKQCNCK HSRCLKLYCE CFASGVYCDG CNCNNCHNNV  60
ENEPARREAV EATLERNPHA FRPKIASSPH GARDNKEETG DGLVLAKHNK GCHCKKSGCL  120
KKYCECFQAN ILCSENCKCM DCKNFEGSEE RQALFHGDHA NNMAYLQQAA NAAITGAIGS  180
SGYGSPPVNR KRKSQELFFA STIKDPVHRH GQLQQGNHIK SSVLPSLSSS PGPCVGNATT  240
VGPSKFTYRS LLEDLIQPQD LKELCSVLVV YSGEAAKMLA DEKDASKKQA EGQTEASLAS  300
STQERVQNQK DSGSEKDMLD CCSSGDQGEK ISMEESSLDG ADVSKRRPMS PGTLALMCDE  360
SDTMFAAAIT SPNDLATLGC NTSSQLPHGQ GMTETYAEQE RIVLTKFRDC LNRLVTLGEI  420
KGNFFSFLFC LNLVLIH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-32151562132Protein lin-54 homolog
5fd3_B1e-32151562132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400000611
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006353466.20.0PREDICTED: protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD10.0TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLM0ZHE00.0M0ZHE0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000008240.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-172Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]