PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400000545
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NF-YA
Protein Properties Length: 302aa    MW: 33582.8 Da    PI: 9.7163
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400000545genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA50.66.4e-16116151137
             CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkp 37 
                           d p+YVNaKQy++Il+RRq Rakle+++kl  k+rk 
  PGSC0003DMP400000545 116 DGPIYVNAKQYHGILRRRQIRAKLEAQNKL-VKNRKY 151
                           57****************************.777763 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.5E-10114181IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115219.547115175IPR001289Nuclear transcription factor Y subunit A
PfamPF020458.4E-12118221IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860120140IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MKSLDPDLQG ETLRLTHSTL NSQDEMTASG KTHSQDQCAS SDYVHDERYG REMQVQIKPA  60
LFSLQNEVAH STGFSAFGYS DPYISGLYTA YGPQPYPHMM GIAPARVPLP IDMAEDGPIY  120
VNAKQYHGIL RRRQIRAKLE AQNKLVKNRK YEKFHHIDQY GRRNMQIVSY RDLTKGKKLT  180
AYDLLPVGGG RTLVALHFQV LGLTLCATRA VNRVRGSGGR FLSSKKVHQS DPNSYPTNST  240
SSLDSVEHEG STSAFSSVRQ DVVHNGINFQ QQPDHMAFSV SSHMVITMQG NGSQQRAPVV  300
R*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400000545
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754511e-127HG975451.1 Solanum pennellii chromosome ch12, complete genome.
GenBankHG9755241e-127HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015166862.11e-163PREDICTED: nuclear transcription factor Y subunit A-7-like
RefseqXP_015166863.11e-163PREDICTED: nuclear transcription factor Y subunit A-7-like
RefseqXP_015166864.11e-163PREDICTED: nuclear transcription factor Y subunit A-7-like
RefseqXP_015166865.11e-163PREDICTED: nuclear transcription factor Y subunit A-7-like
TrEMBLM0ZH800.0M0ZH80_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000007400.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA50092338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.26e-23nuclear factor Y, subunit A3
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]