PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400000453
Common NameLOC102602986
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 347aa    MW: 38868.8 Da    PI: 5.6999
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400000453genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.87.9e-27136196259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                           +Dg++WrKYGqK++ g+++pr+YYrCt++   gC ++k+v++s+ + +++e+tY+g+H ++
  PGSC0003DMP400000453 136 EDGFSWRKYGQKDILGANHPRAYYRCTHRntqGCLATKQVQKSDGNSTIFEVTYKGRHSCK 196
                           8***************************98889*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-26128197IPR003657WRKY domain
SuperFamilySSF1182906.02E-24134197IPR003657WRKY domain
SMARTSM007749.1E-38135197IPR003657WRKY domain
PROSITE profilePS5081121.712136198IPR003657WRKY domain
PfamPF031065.9E-25136196IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MEKVKSMEKK KLINELTQGK EFVNQLKNQI IGPLASPEEC DLLIGKILST LEKSLSILNL  60
KALLLEGGIN NTNNSSSSCS SISFLASNNN ISPKSEVFDS SRDQLDKNMV SKKRKKTQQW  120
INQTSISVNG LEGPCEDGFS WRKYGQKDIL GANHPRAYYR CTHRNTQGCL ATKQVQKSDG  180
NSTIFEVTYK GRHSCKVAQS EIFSLNNQKR QKCNKKQKEE MVIFNSASPN HNVENLNIIT  240
AKEEEVFTPF PFPPAPLHIE NVEENKFFPD SMAPFSSPIA SELPLYLSLL TSQNDEFGME  300
HMILQSSDSD LTELISTPTS ISNSSFGGEG MDYEHEITFD IEEFFI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-18136196969OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111115KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400000453
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU4545850.0GU454585.1 Solanum lycopersicum WRKY transcription factor (WRKY3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339686.10.0PREDICTED: probable WRKY transcription factor 41
TrEMBLM0ZH040.0M0ZH04_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000005990.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55532237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.24e-39WRKY family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]