PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PGSC0003DMP400000239 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | B3 | ||||||||
Protein Properties | Length: 185aa MW: 21610.1 Da PI: 10.4289 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 37 | 6.2e-12 | 81 | 167 | 11 | 84 |
HHT.T-EE--HHH.HTT.............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 11 lks.grlvlpkkfaeeh.............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 +++ +r+ +p +++++ + k +++ ++++d++g+ ++k++ +k+ gr v+ +GW++ v++n+ + gD + + + PGSC0003DMP400000239 81 NANlSRFLIPVECCSKLihymtrlerekilN-KDDRGINVSVMDPKGNLHDMKFTGWKSLGRLVFNRGWNNLVRDNQFQKGDLLELWH 167 444499********99999999998888752.334899*********999999888**************************987654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.55E-16 | 69 | 171 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.755 | 72 | 184 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.0E-12 | 73 | 170 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.50E-12 | 73 | 179 | No hit | No description |
Pfam | PF02362 | 5.2E-9 | 83 | 166 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MTTIRLFGND IKVSEKKEVK SIMLFGTRIF FQSPALNNNN NDRFINMADL PPRSMHLAIE 60 SIRGSRPVYM GWKYLENSDI NANLSRFLIP VECCSKLIHY MTRLEREKIL NKDDRGINVS 120 VMDPKGNLHD MKFTGWKSLG RLVFNRGWNN LVRDNQFQKG DLLELWHFRM PNNKPCFAIN 180 IIRF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | PGSC0003DMP400000239 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015081571.1 | 1e-116 | B3 domain-containing protein At2g32645-like | ||||
TrEMBL | M0ZGI1 | 1e-133 | M0ZGI1_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400000314 | 1e-134 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11679 | 11 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03170.1 | 6e-09 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | PGSC0003DMP400000239 |
Publications ? help Back to Top | |||
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