![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PEQU_42098 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 336aa MW: 37217.4 Da PI: 6.5183 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.9 | 3.3e-20 | 159 | 207 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ +l+g PEQU_42098 159 FRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAAMAYDKAAYRLRG 207 8******9.**********955...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.71E-33 | 157 | 217 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.0E-32 | 158 | 216 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-22 | 158 | 216 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.13 | 158 | 215 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.7E-39 | 158 | 221 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.7E-14 | 159 | 207 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.5E-11 | 159 | 170 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.5E-11 | 181 | 197 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 336 aa Download sequence Send to blast |
MAAAINLQNS WPFYSSDSSG EELMQALEPF IKRAPSSSSS SSPSPSPSLS YSPTQAPTFS 60 SSPSSSSFYS PFHSSLFSQN SVLDFPSSSI GLTHLNSDQI QQIQSQFYLQ QQHQMQHPIL 120 PDNIQSLPPP LPQRQSFLSP RPAAMKHTAA TASKPLKLFR GVRQRHWGKW VAEIRLPRNR 180 TRLWLGTFDT AEEAAMAYDK AAYRLRGDSA RLNFPNLRQN GSHLGSPLHA SIDAKLQVIC 240 EELSKAPAKQ GRGAASKQIL LQKSDLDIPV VAENKPESSV EETELSFSSS SSSSQASSPV 300 SEMDQLDFTE APWDESENFV LRKYPSWEID WDSILS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-20 | 157 | 220 | 4 | 67 | ATERF1 |
3gcc_A | 1e-20 | 157 | 220 | 4 | 67 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020585570.1 | 0.0 | ethylene-responsive transcription factor RAP2-13-like | ||||
TrEMBL | A0A2I0WZ47 | 1e-177 | A0A2I0WZ47_9ASPA; Ethylene-responsive transcription factor RAP2-4 | ||||
STRING | POPTR_0005s16690.1 | 9e-85 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP382 | 35 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G78080.1 | 1e-48 | related to AP2 4 |