PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_41930
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family M-type_MADS
Protein Properties Length: 69aa    MW: 8053.36 Da    PI: 10.247
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_41930genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.82.1e-31959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krien++nrqvtf+kRrng+lKKA+ELSvLC+ae+a+i+fss+g++yey++
  PEQU_41930  9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCEAEIALIVFSSRGRVYEYAN 59
                79***********************************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.2E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.207161IPR002100Transcription factor, MADS-box
CDDcd002655.75E-38260No hitNo description
SuperFamilySSF554551.01E-29261IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.2E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-333859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 69 aa     Download sequence    Send to blast
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCE AEIALIVFSS RGRVYEYANN  60
RYFASTYLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-21159159Myocyte-specific enhancer factor 2B
1tqe_Q3e-21159159Myocyte-specific enhancer factor 2B
1tqe_R3e-21159159Myocyte-specific enhancer factor 2B
1tqe_S3e-21159159Myocyte-specific enhancer factor 2B
6c9l_A3e-21159159Myocyte-specific enhancer factor 2B
6c9l_B3e-21159159Myocyte-specific enhancer factor 2B
6c9l_C3e-21159159Myocyte-specific enhancer factor 2B
6c9l_D3e-21159159Myocyte-specific enhancer factor 2B
6c9l_E3e-21159159Myocyte-specific enhancer factor 2B
6c9l_F3e-21159159Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the development of floral organs. Acts as C-class protein in association with MADS58. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3) and floral meristem determinacy (whorl 4), but not in the regulation of carpel morphogenesis. Plays a more predominant role in controlling lodicule development and in specifying stamen identity than MADS58. {ECO:0000269|PubMed:11828031, ECO:0000269|PubMed:16326928, ECO:0000269|PubMed:9869408}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9835005e-97JN983500.1 Phalaenopsis equestris MADS-box protein 7 (MADS7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018674452.12e-37PREDICTED: agamous-like MADS-box protein AGL11 isoform X1
SwissprotQ407044e-36MADS3_ORYSJ; MADS-box transcription factor 3
TrEMBLA0A151R6334e-36A0A151R633_CAJCA; Floral homeotic protein AGAMOUS
TrEMBLV7BMU36e-36V7BMU3_PHAVU; Uncharacterized protein
STRINGXP_007146364.11e-36(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.23e-38MIKC_MADS family protein
Publications ? help Back to Top
  1. Kyozuka J,Shimamoto K
    Ectopic expression of OsMADS3, a rice ortholog of AGAMOUS, caused a homeotic transformation of lodicules to stamens in transgenic rice plants.
    Plant Cell Physiol., 2002. 43(1): p. 130-5
    [PMID:11828031]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]