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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_41149 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | WOX | ||||||||
Protein Properties | Length: 181aa MW: 19292.9 Da PI: 9.4877 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.6 | 2.5e-09 | 3 | 40 | 24 | 57 |
S--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 24 ypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +p ++e++++ ++l ++ +++V++WFqNr+ + k+ PEQU_41149 3 NPPRDEIRRIRSQLqvygQVGDANVFYWFQNRKSRSKH 40 7999*******************************995 PP | |||||||
2 | Wus_type_Homeobox | 67.4 | 2.6e-22 | 1 | 42 | 24 | 65 |
Wus_type_Homeobox 24 lrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++P+++ei+ri+++L+ yG+++d+NVfyWFQNrk+R+++kq PEQU_41149 1 MVNPPRDEIRRIRSQLQVYGQVGDANVFYWFQNRKSRSKHKQ 42 78**************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00086 | 0.00532 | 3 | 42 | No hit | No description |
SuperFamily | SSF46689 | 4.94E-6 | 3 | 44 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 7.1E-7 | 3 | 40 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MVNPPRDEIR RIRSQLQVYG QVGDANVFYW FQNRKSRSKH KQRHLKSTPA AAAAAKSTPP 60 PLTPASSTST SGSNTKQIVT TLPALSTFFD QNFLQAPILM PELSLESSVL LPASYQISSG 120 ELSGGSPAAW DLIMQEVFPS KSAGASIGCV VSGDEEIAVA TGTATPGTVN EIKGTLYIIL 180 K |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020594396.1 | 1e-124 | WUSCHEL-related homeobox 13-like, partial | ||||
TrEMBL | A0A2I0WCQ3 | 7e-62 | A0A2I0WCQ3_9ASPA; WUSCHEL-related homeobox 8 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2666 | 34 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33880.1 | 2e-22 | homeobox-3 |