PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_41012
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family NAC
Protein Properties Length: 90aa    MW: 10595 Da    PI: 11.37
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_41012genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.51.6e-3378354129
         NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                 + +ewyfFs rd+kyatg+r+nrat+sgyWkatgkd++v+++ ++++vg++ktLvfy+grap+g kt+Wvmhe+rle
  PEQU_41012   7 SPNEWYFFSFRDRKYATGSRTNRATRSGYWKATGKDRTVHNHrTHSTVGMRKTLVFYHGRAPNGLKTNWVMHEFRLE 83 
                 568*************************************9856778***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100535.747190IPR003441NAC domain
SuperFamilySSF1019414.58E-34387IPR003441NAC domain
PfamPF023656.0E-17882IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
AEMAKLSPNE WYFFSFRDRK YATGSRTNRA TRSGYWKATG KDRTVHNHRT HSTVGMRKTL  60
VFYHGRAPNG LKTNWVMHEF RLETPHSPPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-2748569148NAC domain-containing protein 19
3swm_B3e-2748569148NAC domain-containing protein 19
3swm_C3e-2748569148NAC domain-containing protein 19
3swm_D3e-2748569148NAC domain-containing protein 19
3swp_A3e-2748569148NAC domain-containing protein 19
3swp_B3e-2748569148NAC domain-containing protein 19
3swp_C3e-2748569148NAC domain-containing protein 19
3swp_D3e-2748569148NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020574015.11e-60NAC domain-containing protein 21/22-like
SwissprotQ9S8512e-35NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLA0A2I0XD994e-50A0A2I0XD99_9ASPA; NAC domain-containing protein 100
STRINGGSMUA_AchrUn_randomP02760_0013e-49(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2506755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.16e-46NAC domain containing protein 74
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]