PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

GRAS

Protein Properties

Length: 507aa MW: 58594 Da PI: 8.4562

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_40443	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	371.8	9e-114	134	503	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 +lLl+cA+ +++g++++a+ lL ++++++sp+gd++qRla+y++ +L+arla+++se+y++l ++++ +s++l+a++l+ ++P+ k+s+ aN PEQU_40443 134 NTLLLHCAQTITAGNNQRANDLLRQIRHHSSPHGDAFQRLAHYIADGLEARLAGTGSEVYRSLVNKRKT---VSDVLKAYQLYLATCPFRKLSYSYANM 229 679**********************************************************999998...9********************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 +Il+ +++++rvHiiDf+i G+QWp +++ L+ Rp+gpp+lRiTg+++p +g +e++eetg+rLa++A+++gv+fe+++ +a ++++++lee++++ PEQU_40443 230 TILDTIQTAKRVHIIDFGIFFGFQWPVFIKMLSLRPGGPPKLRITGIDNPLPGfrPAERIEETGRRLAHYAARFGVSFEYHA-IAAKFNEVKLEEIHFR 327 **********************************************99999***********************.799********* PP GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296 ++E+l+Vn+ ++lh l de+v ++ +rd+vLk++++lsP v++ v + +++++ F++rf e l+++sa+fd+l+a++pre+e+r +Er + gr + n PEQU_40443 328 EDEMLVVNSLFRLHGLADETVVVDCPRDRVLKAIRELSPAVFINVVVNGSYGAPFFMTRFREVLYHFSAVFDMLDATVPRENEQRYLLERDMYGRFLIN 426 *********************************************************************************************** PP GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +++ceg e rer et+++W++r +aGF+++pl + +k +k+ +r ++ + + ++e+ +++++ Wk+r L+ +SaWr PEQU_40443 427 AISCEGLE-RERPETYKQWQMRCLRAGFEQIPLCREFVKMVKSKVRAYYHKDFGIDEDGEWVLQEWKGRILYCLSAWR 503 ****.9***********************************889***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.967	107	483	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.1E-111	134	503	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence Send to blast
SSSVNDDELF FKTLPASQFE KGVEEAKKFL PSADKLVINF GEIDHKFHRE ATNSSRRPKH 60 HHRDESAFGD LRRKKYSAIS FEEPAVPPQD LDDILLCGSD FPQVVSAIRE KIFNEATNKS 120 TKHRRQNEEV VDLNTLLLHC AQTITAGNNQ RANDLLRQIR HHSSPHGDAF QRLAHYIADG 180 LEARLAGTGS EVYRSLVNKR KTVSDVLKAY QLYLATCPFR KLSYSYANMT ILDTIQTAKR 240 VHIIDFGIFF GFQWPVFIKM LSLRPGGPPK LRITGIDNPL PGFRPAERIE ETGRRLAHYA 300 ARFGVSFEYH AIAAKFNEVK LEEIHFREDE MLVVNSLFRL HGLADETVVV DCPRDRVLKA 360 IRELSPAVFI NVVVNGSYGA PFFMTRFREV LYHFSAVFDM LDATVPRENE QRYLLERDMY 420 GRFLINAISC EGLERERPET YKQWQMRCLR AGFEQIPLCR EFVKMVKSKV RAYYHKDFGI 480 DEDGEWVLQE WKGRILYCLS AWRPSFC

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence Send to blast

SSSVNDDELF FKTLPASQFE KGVEEAKKFL PSADKLVINF GEIDHKFHRE ATNSSRRPKH  60
HHRDESAFGD LRRKKYSAIS FEEPAVPPQD LDDILLCGSD FPQVVSAIRE KIFNEATNKS  120
TKHRRQNEEV VDLNTLLLHC AQTITAGNNQ RANDLLRQIR HHSSPHGDAF QRLAHYIADG  180
LEARLAGTGS EVYRSLVNKR KTVSDVLKAY QLYLATCPFR KLSYSYANMT ILDTIQTAKR  240
VHIIDFGIFF GFQWPVFIKM LSLRPGGPPK LRITGIDNPL PGFRPAERIE ETGRRLAHYA  300
ARFGVSFEYH AIAAKFNEVK LEEIHFREDE MLVVNSLFRL HGLADETVVV DCPRDRVLKA  360
IRELSPAVFI NVVVNGSYGA PFFMTRFREV LYHFSAVFDM LDATVPRENE QRYLLERDMY  420
GRFLINAISC EGLERERPET YKQWQMRCLR AGFEQIPLCR EFVKMVKSKV RAYYHKDFGI  480
DEDGEWVLQE WKGRILYCLS AWRPSFC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-52	122	504	8	380	Protein SCARECROW
5b3h_A	2e-52	122	504	7	379	Protein SCARECROW
5b3h_D	2e-52	122	504	7	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020595251.1	0.0	scarecrow-like protein 14, partial
Swissprot	Q9XE58	1e-162	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A3G2CI74	0.0	A0A3G2CI74_CYMEN; Scarecrow-like protein 14-like
STRING	XP_008784606.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1505	38	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-164	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]