PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

YABBY

Protein Properties

Length: 122aa MW: 13798.6 Da PI: 8.6513

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_40394	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	137.1	2e-42	1	117	31	160
YABBY 31 lfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsay 129 ++++vtvrCGhC++lls +++ ++ + + +++ +e++ ++k+e+ +++ ++e s ++v++ + +++ +p +rPPekrqrvPsay PEQU_40394 1 MSNIVTVRCGHCSNLLSADMRGMVLTDTQQNN------QEIQYDMKTEDLHVHLGSVSECSRASEVNT--FGVGQQRILP-----NRPPEKRQRVPSAY 86 579************999998877777775......788999999888888777666555555555..5677777777.....8********* PP YABBY 130 nrfikeeiqrikasnPdishreafsaaaknW 160 n+fikeeiqrikasnPdishreafsaaakn PEQU_40394 87 NKFIKEEIQRIKASNPDISHREAFSAAAKNV 117 ****************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.5E-42	1	117	IPR006780	YABBY protein
SuperFamily	SSF47095	9.56E-7	68	114	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 122 aa Download sequence Send to blast
MSNIVTVRCG HCSNLLSADM RGMVLTDTQQ NNQEIQYDMK TEDLHVHLGS VSECSRASEV 60 NTFGVGQQRI LPNRPPEKRQ RVPSAYNKFI KEEIQRIKAS NPDISHREAF SAAAKNVSYK 120 FC

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020596390.1	2e-88	protein YABBY 2-like, partial
Swissprot	Q8GW46	1e-34	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A2I0VNK5	5e-64	A0A2I0VNK5_9ASPA; Protein YABBY 2
STRING	XP_008778120.1	7e-41	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1394	37	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	4e-37	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]