PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_40120
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C2H2
Protein Properties Length: 353aa    MW: 38675.2 Da    PI: 8.3176
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_40120genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.23.7e-07157178223
                 EETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                  C++Cgk F+r  nL+ H+r H
  PEQU_40120 157 FCEICGKGFRRDANLRMHMRAH 178
                 6*******************99 PP
2zf-C2H212.60.00042246269123
                 EEETTTT.EEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                 y+C  C+ ksFs   +Lk+H +++
  PEQU_40120 246 YTCDLCNkKSFSVVADLKSHRKSC 269
                 9********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.46E-6153178No hitNo description
Gene3DG3DSA:3.30.160.606.4E-6156178IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.676156178IPR007087Zinc finger, C2H2
SMARTSM003550.0017156178IPR015880Zinc finger, C2H2-like
PfamPF128740.0058157176No hitNo description
PROSITE patternPS000280158178IPR007087Zinc finger, C2H2
SMARTSM0035596208241IPR015880Zinc finger, C2H2-like
SMARTSM0035559246267IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MIGIGRRNFG GSATGVIEPP DFMSSPVMLT APTTSDPGIP LLNLSLLGKK MDSLRFFLSD  60
SIDRRVSISG DQLQFVSNEI ASVVHQVIIN GSALLLASTR HSDGVKPLQL PSKVDADPSD  120
NTAQLPPPPL RSSAVAESDG QIVEIDAAEL MAEHVHFCEI CGKGFRRDAN LRMHMRAHGD  180
RFKTLESLTK PDGRISSEAI CPGRKVRFSC PFLGCRRNQS HPRFRPLKTT VCVRNHFRRS  240
HCPKLYTCDL CNKKSFSVVA DLKSHRKSCG ESQWRCTCGT SFSRKDKLFG HVTLFDGHFP  300
VVGAVEEEKG ESMVKGGEIK DERGGQAGGS VDEEFFSGLM EEIGVMGGGW MRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020595217.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
TrEMBLA0A2I0XG430.0A0A2I0XG43_9ASPA; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
STRINGXP_008790878.11e-120(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125503236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-72C2H2 family protein