PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_40098
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family ERF
Protein Properties Length: 58aa    MW: 6756.81 Da    PI: 11.4448
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_40098genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.5e-17149355
         AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                y+GVr +k +g+WvAeIr+p   +kr r++lg++ ++  Aa+a++ a   l+g
  PEQU_40098  1 YRGVRMRK-WGKWVAEIREP---NKRSRIWLGSYSSPVAAARAYDTAVYLLRG 49
                9*****99.**********9...336*********************998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.4E-11147IPR001471AP2/ERF domain
SMARTSM003801.5E-29158IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-21157IPR016177DNA-binding domain
CDDcd000181.02E-24158No hitNo description
PROSITE profilePS5103222.774157IPR001471AP2/ERF domain
PRINTSPR003671.2E-12112IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-30158IPR001471AP2/ERF domain
PRINTSPR003671.2E-123958IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 58 aa     Download sequence    Send to blast
YRGVRMRKWG KWVAEIREPN KRSRIWLGSY SSPVAAARAY DTAVYLLRGR SALLNFPD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-171571572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020594294.12e-35ethylene-responsive transcription factor RAP2-1-like
SwissprotQ9SW637e-30RA210_ARATH; Ethylene-responsive transcription factor RAP2-10
TrEMBLA0A2I0VEL68e-34A0A2I0VEL6_9ASPA; Ethylene-responsive transcription factor RAP2-1
STRINGXP_008776525.13e-31(Phoenix dactylifera)
STRINGXP_010270594.12e-31(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39433075
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36900.13e-32related to AP2 10
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]