PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_40098 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | ERF | ||||||||
Protein Properties | Length: 58aa MW: 6756.81 Da PI: 11.4448 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.7 | 2.5e-17 | 1 | 49 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr +k +g+WvAeIr+p +kr r++lg++ ++ Aa+a++ a l+g PEQU_40098 1 YRGVRMRK-WGKWVAEIREP---NKRSRIWLGSYSSPVAAARAYDTAVYLLRG 49 9*****99.**********9...336*********************998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.4E-11 | 1 | 47 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-29 | 1 | 58 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-21 | 1 | 57 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.02E-24 | 1 | 58 | No hit | No description |
PROSITE profile | PS51032 | 22.774 | 1 | 57 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-12 | 1 | 12 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-30 | 1 | 58 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-12 | 39 | 58 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 58 aa Download sequence Send to blast |
YRGVRMRKWG KWVAEIREPN KRSRIWLGSY SSPVAAARAY DTAVYLLRGR SALLNFPD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-17 | 1 | 57 | 15 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020594294.1 | 2e-35 | ethylene-responsive transcription factor RAP2-1-like | ||||
Swissprot | Q9SW63 | 7e-30 | RA210_ARATH; Ethylene-responsive transcription factor RAP2-10 | ||||
TrEMBL | A0A2I0VEL6 | 8e-34 | A0A2I0VEL6_9ASPA; Ethylene-responsive transcription factor RAP2-1 | ||||
STRING | XP_008776525.1 | 3e-31 | (Phoenix dactylifera) | ||||
STRING | XP_010270594.1 | 2e-31 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3943 | 30 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36900.1 | 3e-32 | related to AP2 10 |
Publications ? help Back to Top | |||
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