PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

PEQU_39798

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

GRAS

Protein Properties

Length: 378aa MW: 42006.3 Da PI: 6.7914

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_39798	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	270.4	5.8e-83	16	376	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 + L+++A+ ++sg++ a+++Larl+++ sp+g+p+ R a+yf+eAL a ++s+++++ s s+ ++ +l+a+k+f e+sP+l f+ +t q PEQU_39798 16 DPLFKAAKLLESGNTISAHRILARLNHQlPSPSGKPFLRTAFYFKEALLAISNGSSEQCSF----SLGSPLDVLLKLSAYKAFAEISPVLLFTSFTSTQ 110 569*********************998***************9998887776664....4444455999******************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL. 194 Ile+++g++ +H+iDfd++ G +WpaL+q+L++R+ g+p +lRiT+++s +s+++ el+ ++e+L++fA+ l+vpfe n+l +e++++ ++ PEQU_39798 111 IILEELAGANVIHVIDFDVGVGSHWPALIQELSERRsavTGAPlQLRITAFVSVASHHQVELHLIHENLNHFAADLNVPFELNFL---PFESFDPASIi 206 *****************************99978855666************************************9...99999999985 PP GRAS 195 .rvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291 +++p + a+aVn+++ + + +s++s +L l+k+lsPk+++ v+ d+++ sF +++l++++ ++l+ds+ea+ + e +Er +l+ PEQU_39798 207 fSCSPsDVAIAVNFAFGFCHHH---LSTQS----LLFLIKQLSPKILISVNLGYDRGDISFSHHVLHSFQSTTVLLDSIEAS-GVSPEITDRIERYMLR 297 567777889**9876665...56666....*****************************************888.4555777889** PP GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++ivn + + + e+l Wr +++aGF p+++s++a++qa++ll+k +++g++ve+ +++l+l Wk++++ +vSaWr PEQU_39798 298 PRIVNSLLGRYKT----GEKLLPWRTFFTSAGFVPLQFSNFAESQADCLLKKAQVRGFEVEKCEAALMLSWKQQEIAVVSAWR 376 ***998888....9**************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	40.054	1	356	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.0E-80	16	376	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MQLPNEAAWQ QQAVIDPLFK AAKLLESGNT ISAHRILARL NHQLPSPSGK PFLRTAFYFK 60 EALLAISNGS SEQCSFSLGS PLDVLLKLSA YKAFAEISPV LLFTSFTSTQ IILEELAGAN 120 VIHVIDFDVG VGSHWPALIQ ELSERRSAVT GAPLQLRITA FVSVASHHQV ELHLIHENLN 180 HFAADLNVPF ELNFLPFESF DPASIIFSCS PSDVAIAVNF AFGFCHHHLS TQSLLFLIKQ 240 LSPKILISVN LGYDRGDISF SHHVLHSFQS TTVLLDSIEA SGVSPEITDR IERYMLRPRI 300 VNSLLGRYKT GEKLLPWRTF FTSAGFVPLQ FSNFAESQAD CLLKKAQVRG FEVEKCEAAL 360 MLSWKQQEIA VVSAWRCQ

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MQLPNEAAWQ QQAVIDPLFK AAKLLESGNT ISAHRILARL NHQLPSPSGK PFLRTAFYFK  60
EALLAISNGS SEQCSFSLGS PLDVLLKLSA YKAFAEISPV LLFTSFTSTQ IILEELAGAN  120
VIHVIDFDVG VGSHWPALIQ ELSERRSAVT GAPLQLRITA FVSVASHHQV ELHLIHENLN  180
HFAADLNVPF ELNFLPFESF DPASIIFSCS PSDVAIAVNF AFGFCHHHLS TQSLLFLIKQ  240
LSPKILISVN LGYDRGDISF SHHVLHSFQS TTVLLDSIEA SGVSPEITDR IERYMLRPRI  300
VNSLLGRYKT GEKLLPWRTF FTSAGFVPLQ FSNFAESQAD CLLKKAQVRG FEVEKCEAAL  360
MLSWKQQEIA VVSAWRCQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-25	48	376	36	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020595356.1	0.0	scarecrow-like protein 6
TrEMBL	A0A2I0XA34	1e-159	A0A2I0XA34_9ASPA; Scarecrow-like protein 6
STRING	XP_008796953.1	1e-135	(Phoenix dactylifera)
STRING	GSMUA_Achr1P05940_001	1e-136	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2020	37	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-88	GRAS family protein