PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_39732

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

C2H2

Protein Properties

Length: 181aa MW: 19957 Da PI: 10.3594

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_39732	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.3	0.00012	56	78	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ Cg++F++ L H +H PEQU_39732 56 YNCKTCGRTFPSYQALGGHRARH 78 89*************99999988 PP
2	zf-C2H2	14.7	8.9e-05	105	127	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cgk F + L H r+H PEQU_39732 105 YECSICGKIFASGQALGGHKRSH 127 99*****************9999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	4.9E-13	55	80	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.043	56	78	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.242	56	83	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	9.17E-11	56	127	No hit	No description
PROSITE pattern	PS00028	0	58	78	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	6.3E-5	103	127	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.02	105	127	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	2.6E-11	105	127	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.281	105	127	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	107	127	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MIPSVPKFDF GSNGHEKVQS FPSESEFSLK LKKSKASSHR KDLHYVASGI EKKSRYNCKT 60 CGRTFPSYQA LGGHRARHMR IKVPSFSEVL DTKELKIQNH GSKFYECSIC GKIFASGQAL 120 GGHKRSHLVA ADNAASTPAP AEAVQASAAV TANMEQISYV SARLISTFQL WKMKVMVIMM 180 T

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020595961.1	1e-134	zinc finger protein ZAT9-like
TrEMBL	A0A2I0WTX2	1e-46	A0A2I0WTX2_9ASPA; Zinc finger protein ZAT1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3861	35	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	2e-20	C2H2-like zinc finger protein