PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

M-type_MADS

Protein Properties

Length: 65aa MW: 7389.77 Da PI: 10.5453

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_39331	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	70.8	1.2e-22	10	52	2	44
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 + e++s r+ t++kRr+gilKKA+ELS+LCd+ev++++fs++g PEQU_39331 10 KLESNSARNATYTKRRAGILKKAKELSILCDIEVLLLMFSPNG 52 67999************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	6.54E-22	1	56	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.4E-24	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	23.38	1	52	IPR002100	Transcription factor, MADS-box
CDD	cd00120	4.59E-22	2	54	No hit	No description
PRINTS	PR00404	1.0E-16	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.8E-20	11	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.0E-16	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.0E-16	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 65 aa Download sequence Send to blast
MGRAKLQIKK LESNSARNAT YTKRRAGILK KAKELSILCD IEVLLLMFSP NGNPTLCLGE 60 QRYFF

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020575605.1	1e-35	agamous-like MADS-box protein AGL65
Refseq	XP_020575606.1	1e-35	agamous-like MADS-box protein AGL65
Refseq	XP_020575607.1	1e-35	agamous-like MADS-box protein AGL65
Refseq	XP_020575608.1	1e-35	agamous-like MADS-box protein AGL65
Swissprot	Q7X9I0	5e-21	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	A0A426X4K0	4e-27	A0A426X4K0_ENSVE; Uncharacterized protein
STRING	GLYMA05G00960.1	3e-25	(Glycine max)
STRING	Pavir.J04162.1.p	7e-25	(Panicum virgatum)
STRING	OS11T0658700-00	1e-25	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4626	36	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69540.1	6e-24	AGAMOUS-like 94

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]