PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_39193
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C3H
Protein Properties Length: 340aa    MW: 38237.9 Da    PI: 8.4746
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_39193genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.13.1e-08114133626
                 -SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                 C++f++ G Ck Gd C FaHg
  PEQU_39193 114 CPNFRK-GDCKKGDACEFAHG 133
                 ******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.46108135IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-4108134IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-6114133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-5114135IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MAESILKNRT VKVPSWPPFD DHRPIRTISG DYLLTEAALA ELQCYVRAEA DETAELTDLR  60
SEEYSSDEFR MYEFKIRLCN RSRSHDWTEC PYAHPGEKAR RRDPRKYQYS GVGCPNFRKG  120
DCKKGDACEF AHGVFECWLH PARYRTQHCK DGRDCRRRVC FFAHRPEQLR VPPIQLQQSS  180
RSIDSYDGSQ KRNRNRNQAL DLYFSKGITP SSPTSTLISP PISSPANSPP VSPNGLRMRR  240
AAINEVSLSI GTVHLRKVVG HGLCSFPASS TAAGSAGGGG WLDLESDWEK EEGVGRVESG  300
RALRAKMYER VSKESGVNRP ENETAAQAVP DVGWVSELIM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190195KRNRNR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020596057.10.0zinc finger CCCH domain-containing protein 35-like
SwissprotQ6L4N48e-84C3H35_ORYSJ; Zinc finger CCCH domain-containing protein 35
TrEMBLA0A2I0X2J81e-154A0A2I0X2J8_9ASPA; Zinc finger CCCH domain-containing protein 2
STRINGcassava4.1_009450m1e-100(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.14e-83C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]