PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_39087 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 61aa MW: 7032.26 Da PI: 10.8098 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 102.9 | 1.2e-32 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienk+nrqvtfskRrngi+KKA+ELSvLCdae+a+iifss+gkl+e+ PEQU_39087 9 KRIENKINRQVTFSKRRNGIMKKAYELSVLCDAEIALIIFSSRGKLFEFG 58 79**********************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.473 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.1E-42 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.94E-31 | 2 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.61E-38 | 2 | 60 | No hit | No description |
PRINTS | PR00404 | 3.1E-33 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.8E-28 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-33 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-33 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 61 aa Download sequence Send to blast |
MGRGRVELKR IENKINRQVT FSKRRNGIMK KAYELSVLCD AEIALIIFSS RGKLFEFGSP 60 E |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-22 | 1 | 61 | 1 | 61 | MEF2C |
5f28_B | 1e-22 | 1 | 61 | 1 | 61 | MEF2C |
5f28_C | 1e-22 | 1 | 61 | 1 | 61 | MEF2C |
5f28_D | 1e-22 | 1 | 61 | 1 | 61 | MEF2C |
6byy_A | 1e-22 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6byy_B | 1e-22 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6byy_C | 1e-22 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6byy_D | 1e-22 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6bz1_A | 1e-22 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6bz1_B | 1e-22 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6bz1_C | 1e-22 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6bz1_D | 1e-22 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Plays minor but redundant roles with MADS6 in floral development. {ECO:0000269|PubMed:19820190}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU058679 | 3e-61 | KU058679.1 Cymbidium goeringii AGL6-3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020676503.1 | 1e-33 | MADS-box transcription factor 6-like | ||||
Swissprot | Q7XUN2 | 2e-33 | MAD17_ORYSJ; MADS-box transcription factor 17 | ||||
TrEMBL | A0A2I0X4S5 | 9e-36 | A0A2I0X4S5_9ASPA; MADS-box transcription factor 17 | ||||
STRING | ORGLA02G0240800.1 | 3e-33 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45650.1 | 2e-35 | AGAMOUS-like 6 |
Publications ? help Back to Top | |||
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