PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_39087
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family M-type_MADS
Protein Properties Length: 61aa    MW: 7032.26 Da    PI: 10.8098
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_39087genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF102.91.2e-32958150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                krienk+nrqvtfskRrngi+KKA+ELSvLCdae+a+iifss+gkl+e+ 
  PEQU_39087  9 KRIENKINRQVTFSKRRNGIMKKAYELSVLCDAEIALIIFSSRGKLFEFG 58
                79**********************************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.473161IPR002100Transcription factor, MADS-box
SMARTSM004322.1E-42160IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.94E-31261IPR002100Transcription factor, MADS-box
CDDcd002653.61E-38260No hitNo description
PRINTSPR004043.1E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003198.8E-281057IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-333859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 61 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FSKRRNGIMK KAYELSVLCD AEIALIIFSS RGKLFEFGSP  60
E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-22161161MEF2C
5f28_B1e-22161161MEF2C
5f28_C1e-22161161MEF2C
5f28_D1e-22161161MEF2C
6byy_A1e-22161161MEF2 CHIMERA
6byy_B1e-22161161MEF2 CHIMERA
6byy_C1e-22161161MEF2 CHIMERA
6byy_D1e-22161161MEF2 CHIMERA
6bz1_A1e-22161161MEF2 CHIMERA
6bz1_B1e-22161161MEF2 CHIMERA
6bz1_C1e-22161161MEF2 CHIMERA
6bz1_D1e-22161161MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Plays minor but redundant roles with MADS6 in floral development. {ECO:0000269|PubMed:19820190}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586793e-61KU058679.1 Cymbidium goeringii AGL6-3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020676503.11e-33MADS-box transcription factor 6-like
SwissprotQ7XUN22e-33MAD17_ORYSJ; MADS-box transcription factor 17
TrEMBLA0A2I0X4S59e-36A0A2I0X4S5_9ASPA; MADS-box transcription factor 17
STRINGORGLA02G0240800.13e-33(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.12e-35AGAMOUS-like 6
Publications ? help Back to Top
  1. Duan Y, et al.
    Characterization of Osmads6-5, a null allele, reveals that OsMADS6 is a critical regulator for early flower development in rice (Oryza sativa L.).
    Plant Mol. Biol., 2012. 80(4-5): p. 429-42
    [PMID:22933119]
  2. Hu Y, et al.
    Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development.
    Mol Plant, 2015. 8(9): p. 1366-84
    [PMID:25917758]
  3. Bai X, et al.
    Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.
    Sci Rep, 2016. 6: p. 19022
    [PMID:26744119]