PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_38884 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 64aa MW: 6977.16 Da PI: 9.9646 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 49.5 | 5.3e-16 | 2 | 38 | 9 | 45 |
HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 r v fskRr g++KKA ELS+L +a++ ++fs+ gk PEQU_38884 2 RLVCFSKRRSGLFKKARELSILSGAQIGALVFSPAGK 38 789*******************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 16.007 | 1 | 38 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.22E-15 | 1 | 47 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.2E-9 | 1 | 45 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.2E-19 | 1 | 40 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-7 | 8 | 23 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-7 | 23 | 44 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 64 aa Download sequence Send to blast |
SRLVCFSKRR SGLFKKAREL SILSGAQIGA LVFSPAGKPF VSDVAAMDSL LGLEKRFEIY 60 DAVE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020578254.1 | 2e-36 | agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A455LA50 | 4e-17 | A0A455LA50_9ASPA; MADS-box protein-like protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 2e-14 | AGAMOUS-like 29 |