PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_38884
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family M-type_MADS
Protein Properties Length: 64aa    MW: 6977.16 Da    PI: 9.9646
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_38884genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.55.3e-16238945
                HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                r v fskRr g++KKA ELS+L +a++  ++fs+ gk
  PEQU_38884  2 RLVCFSKRRSGLFKKARELSILSGAQIGALVFSPAGK 38
                789*******************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.007138IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-15147IPR002100Transcription factor, MADS-box
SMARTSM004325.2E-9145IPR002100Transcription factor, MADS-box
PfamPF003198.2E-19140IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-7823IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-72344IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 64 aa     Download sequence    Send to blast
SRLVCFSKRR SGLFKKAREL SILSGAQIGA LVFSPAGKPF VSDVAAMDSL LGLEKRFEIY  60
DAVE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020578254.12e-36agamous-like MADS-box protein AGL29
TrEMBLA0A455LA504e-17A0A455LA50_9ASPA; MADS-box protein-like protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.12e-14AGAMOUS-like 29