PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

HSF

Protein Properties

Length: 470aa MW: 52585.4 Da PI: 4.9606

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_38704	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	112.9	2.1e-35	25	115	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k+y++++d+++++++sw+++++sfvv+++ ef++++Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF++++F kg+k++l++i+ PEQU_38704 25 FLVKTYDMVDDSSTDDIVSWTATKTSFVVWNPPEFSSRLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANDEFVKGQKHKLKNIH 112 9******************999*************************************999.........****************** PP XXX CS HSF_DNA-bind 99 rkk 101 r+k PEQU_38704 113 RRK 115 *98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	4.1E-37	21	114	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	2.83E-34	21	114	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	6.3E-60	21	114	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.3E-18	25	48	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	3.8E-31	25	114	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.3E-18	63	75	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	64	88	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.3E-18	76	88	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence Send to blast
MEPTTSTVDA VAGGSSAGAG GPAPFLVKTY DMVDDSSTDD IVSWTATKTS FVVWNPPEFS 60 SRLLPTYFKH NNFSSFIRQL NTYGFRKIDP ERWEFANDEF VKGQKHKLKN IHRRKPIHSH 120 SNPPHGSADA ERTALEEEIE RLQREKAALQ ANLWRFKQQQ SGTKIQLEDI ERRLLDMEQR 180 QEKMVSFLQR AVQNPKFVEN LVMMGGSSAS ALHKKRRHPG VECCPEVGDN SFCENSCSNS 240 KPTEVGNVFS QDFCDKLRLE LSPAFSESNL VSPSNQGSNE GYRSPQVRPT DDDCPLRMEC 300 LQLVPETLEL SDTGASFCPR KNSLLSDDGD GLISCHLKLS LSSSSMHMDS STNLSRIPSL 360 VDLGVTNGYT GDDSTRISGQ NKNADQVLTD TEAPTFREVS QAGKPASLPA NVRVNDKFWE 420 QFLTERPGYS DTEEASSSLR DDPCEDPQEE RMAERENNLR SIKDMEQLTL

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence Send to blast

MEPTTSTVDA VAGGSSAGAG GPAPFLVKTY DMVDDSSTDD IVSWTATKTS FVVWNPPEFS  60
SRLLPTYFKH NNFSSFIRQL NTYGFRKIDP ERWEFANDEF VKGQKHKLKN IHRRKPIHSH  120
SNPPHGSADA ERTALEEEIE RLQREKAALQ ANLWRFKQQQ SGTKIQLEDI ERRLLDMEQR  180
QEKMVSFLQR AVQNPKFVEN LVMMGGSSAS ALHKKRRHPG VECCPEVGDN SFCENSCSNS  240
KPTEVGNVFS QDFCDKLRLE LSPAFSESNL VSPSNQGSNE GYRSPQVRPT DDDCPLRMEC  300
LQLVPETLEL SDTGASFCPR KNSLLSDDGD GLISCHLKLS LSSSSMHMDS STNLSRIPSL  360
VDLGVTNGYT GDDSTRISGQ NKNADQVLTD TEAPTFREVS QAGKPASLPA NVRVNDKFWE  420
QFLTERPGYS DTEEASSSLR DDPCEDPQEE RMAERENNLR SIKDMEQLTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	7e-21	8	114	12	129	Heat shock factor protein 1
5d5v_B	7e-21	8	114	12	129	Heat shock factor protein 1
5d5v_D	7e-21	8	114	12	129	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020597226.1	0.0	heat stress transcription factor A-5
Swissprot	Q6K6S5	1e-152	HSFA5_ORYSJ; Heat stress transcription factor A-5
TrEMBL	A0A2I0WPI6	0.0	A0A2I0WPI6_9ASPA; Heat stress transcription factor A-5
STRING	XP_008813276.1	1e-179	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9000	32	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-125	HSF family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]