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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_38345 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | ERF | ||||||||
Protein Properties | Length: 163aa MW: 18313.1 Da PI: 11.953 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.2 | 1.3e-15 | 9 | 61 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfs...lgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +gr++AeIrd ++ r+r + lg+f+t+eeAa+a+++a+++l+g PEQU_38345 9 HFRGVRKRP-WGRYAAEIRDpWK----RTRGWlgaLGTFDTPEEAAAAYDQAARALRG 61 69*******.**********773....3444422268*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 19.744 | 9 | 69 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.5E-27 | 9 | 69 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.0E-9 | 9 | 61 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.81E-19 | 9 | 69 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.36E-16 | 9 | 68 | No hit | No description |
SMART | SM00380 | 6.6E-31 | 9 | 75 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.2E-12 | 10 | 21 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.2E-12 | 51 | 71 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MASRGGEVHF RGVRKRPWGR YAAEIRDPWK RTRGWLGALG TFDTPEEAAA AYDQAARALR 60 GPKAKTNFPS PPPPPPPPPI RLQLDLNQLP CHLRSHYALA SPPPPPPPPA PRRPPRCFSE 120 AFCNANLRRL GNRSGVFPSI STSLRHLCRR TLRRRFDFVD LSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-17 | 10 | 69 | 15 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020590934.1 | 1e-113 | ethylene-responsive transcription factor 12-like | ||||
Swissprot | Q94ID6 | 4e-32 | ERF81_ARATH; Ethylene-responsive transcription factor 12 | ||||
TrEMBL | A0A2I0W9W2 | 1e-38 | A0A2I0W9W2_9ASPA; Ethylene-responsive transcription factor 12 | ||||
STRING | GSMUA_Achr6P00240_001 | 1e-32 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 5e-25 | ERF domain protein 12 |