PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

LBD

Protein Properties

Length: 216aa MW: 23483.1 Da PI: 8.8996

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_37484	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.2	1e-41	68	167	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lq+q++ l+ael+++++ PEQU_37484 68 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAITALQRQVQALEAELSAVRT 166 7**********************************************************************************************9998 PP DUF260 100 e 100 e PEQU_37484 167 E 167 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.794	67	168	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.8E-42	68	165	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MLGCAQQGNP NPNPLNLLFL QFPSHLFSRR EKQEDIIKKI KSEADASNHM ARHSLLGSVG 60 VTLNTITPCA ACKLLRRRCA QECPFSPYFS PHEPQKFASV HKVFGASNVS KMLMEVPESQ 120 RADAANSLVY EANVRLRDPV YGCMGAITAL QRQVQALEAE LSAVRTEILK HKYRHAGVHA 180 VLFASTADVS VAAPPPIHGL PRPAAAAAAA SFPCFD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-44	68	171	11	114	LOB family transfactor Ramosa2.1
5ly0_B	2e-44	68	171	11	114	LOB family transfactor Ramosa2.1
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Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020595928.1	1e-126	LOW QUALITY PROTEIN: LOB domain-containing protein 15-like
Swissprot	Q8L5T5	2e-71	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A2I0WAY1	1e-103	A0A2I0WAY1_9ASPA; LOB domain-containing protein 15
STRING	cassava4.1_031813m	2e-85	(Manihot esculenta)
STRING	XP_008782625.1	2e-85	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2630	38	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	5e-74	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]