PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_37220
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family NAC
Protein Properties Length: 298aa    MW: 33889 Da    PI: 7.6212
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_37220genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.14.4e-50121392128
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                 ppGfrFhPtd+el+++yL kkv+g+  +   +i+++d+yk++PwdLp+k+  ++ ew+fFs+r++ky++g r+nra++sgyWkatg+dk++l++ + + 
  PEQU_37220  12 PPGFRFHPTDQELITQYLWKKVSGSLPSDWAIIADIDLYKYNPWDLPEKALFGQGEWFFFSPRERKYPNGARPNRAAASGYWKATGTDKPILAAgNVQC 110
                 9***********************99888799***************87778899**************************************845556 PP

         NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                 +g+kk Lvfy+gr pkg+ktdWvm+eyrl
  PEQU_37220 111 IGVKKALVFYQGRPPKGTKTDWVMQEYRL 139
                 ***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-598168IPR003441NAC domain
PROSITE profilePS5100558.32411168IPR003441NAC domain
PfamPF023654.9E-2612139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MEGEELLSSQ FPPGFRFHPT DQELITQYLW KKVSGSLPSD WAIIADIDLY KYNPWDLPEK  60
ALFGQGEWFF FSPRERKYPN GARPNRAAAS GYWKATGTDK PILAAGNVQC IGVKKALVFY  120
QGRPPKGTKT DWVMQEYRLL DSMAPTQTQK QKSSMRLDDW VLCRVRMKGN TVGENDEMFM  180
ENSNVQPAQE NHAPVKDKNN SSEWGEHLKY LLESPSEGKE TSGEGSSHGF MWSSDHLSCV  240
NYGDAQQQEQ AHRSNDGWVT LLVNMQVYKH KKYSKKSAGK EDTVNYKSLP VESSRSSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-641117015170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with male fertility. {ECO:0000250}.
UniProtTranscription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020585190.10.0NAC transcription factor 32-like
SwissprotA2YMR02e-73NAC10_ORYSI; NAC transcription factor ONAC010
SwissprotQ84TD62e-73NAC47_ARATH; NAC transcription factor 47
TrEMBLA0A2I0AFR31e-114A0A2I0AFR3_9ASPA; NAC transcription factor NAM-B2
STRINGXP_008782049.12e-91(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137971929
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.19e-76NAC domain containing protein 47
Publications ? help Back to Top
  1. Hofmann NR
    A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air.
    Plant Cell, 2013. 25(12): p. 4771
    [PMID:24363314]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]