PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_36765
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family SBP
Protein Properties Length: 567aa    MW: 62818.1 Da    PI: 5.5567
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_36765genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP69.85.3e-2296142248
                 -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS
         SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 
                 C v+gC++dls+++eyhrrhkvCevhsk+p vlv g+eqrfCqqCs 
  PEQU_36765  96 CLVDGCRNDLSHCREYHRRHKVCEVHSKTPIVLVGGQEQRFCQQCSS 142
                 *********************************************97 PP
2SBP45.42.1e-142903293978
                 EEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
         SBP  39 eqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                  q +      fh l efDe krsCr+rL++hn+rrrk+q+
  PEQU_36765 290 AQNYVEPIDMFHLLVEFDEVKRSCRKRLDGHNRRRRKPQS 329
                 5677777889***************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.6E-2289145IPR004333Transcription factor, SBP-box
PROSITE profilePS5114117.26493170IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.41E-2294149IPR004333Transcription factor, SBP-box
PfamPF031105.1E-1696144IPR004333Transcription factor, SBP-box
PfamPF077276.4E-8224272IPR013103Reverse transcriptase, RNA-dependent DNA polymerase
PROSITE profilePS5114111.75242327IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.09E-11291332IPR004333Transcription factor, SBP-box
PfamPF031105.6E-7299326IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MEWEFKMPPW DLTELEQNTG EANLSSVVGS SGSRTGSLDC SVDLKLGGLG DFGMADKWKE  60
ESRSFEMPME MSVAVAAGGQ FKRPRVLSSG SQNVSCLVDG CRNDLSHCRE YHRRHKVCEV  120
HSKTPIVLVG GQEQRFCQQC SSANVVFEES QDALLLTVHS SVEDLILDSG ALNVVENLPE  180
ATVQGSDEIE KESGSGAPIP IIPQTDVEEP QSYEEILQDE SLSKWELTEL LPGKKTLHNK  240
WVYHVKTERD VSKRYKAKFV EKGFQQRQNI VHAEGVVRRD KSDPENNLKA QNYVEPIDMF  300
HLLVEFDEVK RSCRKRLDGH NRRRRKPQSD LISGNLFPNH HGTRFPTYPQ VFPAAATDSA  360
RSTILPSKEE ALSSHQPSPL HFINRSAPPP PSHHFSNSFT WSFKEGKQLP FLQDDNEMTL  420
SSLTPLEPAA TISSATESSS SRKIIFTNGL PRHVDSDCAL SLLSSSTHTP SINLGHEMSV  480
DRVPICGQPM LSNLEYGAGL GLYSHIQATS NNVSTAGVLC SGVENERGGT DAVSDAIEAD  540
LHCQSIFHDE AEGTSDRVSR SLPFSWY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj0_A1e-1694148458squamosa promoter-binding protein-like 12
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1309326KRSCRKRLDGHNRRRRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020592895.10.0squamosa promoter-binding-like protein 18 isoform X1
TrEMBLM9QR454e-94M9QR45_9ASPA; SQUAMOSA promoter-binding-like 9
STRINGXP_008801848.13e-78(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.13e-21SBP family protein