PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

G2-like

Protein Properties

Length: 108aa MW: 11850.6 Da PI: 11.1381

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_36237	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	93.2	2.1e-29	56	105	2	51
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 pr+rWt+ LH++Fv+av++LGG+e+AtPk++lelm+vk Ltl+hvkSHLQ PEQU_36237 56 PRMRWTTSLHAHFVHAVQHLGGHERATPKSVLELMNVKELTLAHVKSHLQ 105 9************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	9.32E-14	54	105	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.3E-26	54	105	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.3E-22	56	105	IPR006447	Myb domain, plants
Pfam	PF00249	9.4E-7	57	105	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 108 aa Download sequence Send to blast
MTTATTPTTI PDLSLQISPP EMINSAALYG STKTKINGFK RSCRSVHGGK RSGRAPRMRW 60 TTSLHAHFVH AVQHLGGHER ATPKSVLELM NVKELTLAHV KSHLQSDV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	3e-16	57	105	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	3e-16	57	105	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	3e-16	57	105	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	3e-16	57	105	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	3e-16	57	105	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	3e-16	57	105	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	3e-16	57	105	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	3e-16	57	105	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds. {ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:19054366, ECO:0000269\|PubMed:20444210}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020597079.1	1e-71	probable transcription factor KAN4
Swissprot	Q9FJV5	5e-32	KAN4_ARATH; Probable transcription factor KAN4
TrEMBL	A0A2I0VMT9	3e-44	A0A2I0VMT9_9ASPA; Putative transcription factor KAN4
STRING	GSMUA_Achr4P23160_001	5e-38	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3742	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42630.2	7e-35	G2-like family protein

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Gomez MD,Ventimilla D,Sacristan R,Perez-Amador MA Gibberellins Regulate Ovule Integument Development by Interfering with the Transcription Factor ATS. Plant Physiol., 2016. 172(4): p. 2403-2415 [PMID:27794102]