PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

ARF

Protein Properties

Length: 391aa MW: 44692 Da PI: 7.6256

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_36147	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	72.5	5.2e-23	111	211	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k+lt sd++++g +++ +++a+++ +++++ +++l+ +d++g +W++k+iyr++++r++lt+GW+ Fv +++L +gD +vF + +++el+v PEQU_36147 111 FCKILTASDTSTHGGFSVLRRHANDCippldMSQPTPTQELSATDLHGFEWRFKHIYRGQPRRHLLTTGWSTFVTSKKLVAGDAFVFL--RGENRELRV 207 99*******************999*77777888***********************************************..348999999 PP EEE- CS B3 95 kvfr 98 +v r PEQU_36147 208 GVKR 211 9865 PP
2	Auxin_resp	103.3	3e-34	237	316	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+ t+++F+v+Y+Pr+ s+F++ v+k+++a+++ +s+GmRfkm+fe+ed++e+r++Gt+vgv dl++ +W++SkWr++k PEQU_36147 237 ASHAVMTQTMFTVCYKPRT--SQFIIGVNKYLEAINNGFSLGMRFKMRFEGEDVPEKRYTGTIVGVGDLSS-QWEGSKWRQMK 316 689*************6..9******************************************777.******975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.47E-39	103	240	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.4E-37	106	225	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	9.69E-19	109	211	No hit	No description
Pfam	PF02362	5.4E-21	111	211	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.533	111	213	IPR003340	B3 DNA binding domain
SMART	SM01019	1.0E-20	111	213	IPR003340	B3 DNA binding domain
Pfam	PF06507	7.6E-32	237	316	IPR010525	Auxin response factor

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009725	Biological Process	response to hormone
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MGEDDLYEEL WRACAGPLVE IPRVGERVYY FPQGHMEQLE ASTNQELDQR IPFFPLPSKI 60 LCRVLNIELR AEAETDEVYA QIALLPESDQ TEPKTTDQCS PEPERPVVHS FCKILTASDT 120 STHGGFSVLR RHANDCIPPL DMSQPTPTQE LSATDLHGFE WRFKHIYRGQ PRRHLLTTGW 180 STFVTSKKLV AGDAFVFLRG ENRELRVGVK RLARHKSTIP SSVISRHSMH LGVLATASHA 240 VMTQTMFTVC YKPRTSQFII GVNKYLEAIN NGFSLGMRFK MRFEGEDVPE KRYTGTIVGV 300 GDLSSQWEGS KWRQMKVQWD ELVNFQRPER LSPWEIEPYS SSTPTPTVPQ SLFTSNKRPK 360 LSMGLSDHPN FGSEYVFRMF SSIISLIFWK I

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MGEDDLYEEL WRACAGPLVE IPRVGERVYY FPQGHMEQLE ASTNQELDQR IPFFPLPSKI  60
LCRVLNIELR AEAETDEVYA QIALLPESDQ TEPKTTDQCS PEPERPVVHS FCKILTASDT  120
STHGGFSVLR RHANDCIPPL DMSQPTPTQE LSATDLHGFE WRFKHIYRGQ PRRHLLTTGW  180
STFVTSKKLV AGDAFVFLRG ENRELRVGVK RLARHKSTIP SSVISRHSMH LGVLATASHA  240
VMTQTMFTVC YKPRTSQFII GVNKYLEAIN NGFSLGMRFK MRFEGEDVPE KRYTGTIVGV  300
GDLSSQWEGS KWRQMKVQWD ELVNFQRPER LSPWEIEPYS SSTPTPTVPQ SLFTSNKRPK  360
LSMGLSDHPN FGSEYVFRMF SSIISLIFWK I

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ldv_A	1e-176	4	341	17	357	Auxin response factor 1
4ldw_A	1e-176	4	341	17	357	Auxin response factor 1
4ldw_B	1e-176	4	341	17	357	Auxin response factor 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269\|PubMed:12036261}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020595729.1	0.0	auxin response factor 9-like
Swissprot	Q9ZPY6	0.0	ARFK_ARATH; Auxin response factor 11
TrEMBL	A0A2I0WQD6	0.0	A0A2I0WQD6_9ASPA; Auxin response factor
STRING	XP_010266558.1	0.0	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1082	36	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46530.1	0.0	auxin response factor 11

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Wójcikowska B,Gaj MD Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis. Plant Cell Rep., 2017. 36(6): p. 843-858 [PMID:28255787]