PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_34838
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family ARR-B
Protein Properties Length: 583aa    MW: 66926.7 Da    PI: 6.0094
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_34838genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like78.77.1e-25200253155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+gLt+e+++SHLQkYR+
  PEQU_34838 200 KARVVWSIDLHKKFVNAVDQI-GFDKVGPKKILDLMNVPGLTRENIASHLQKYRM 253
                 68*******************.9*******************************8 PP
2Response_reg79.98.5e-27191271109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+ + +++l+++l+k  y +v+++ ++++al+ll+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++ Ga 
    PEQU_34838  19 VLVVDDDLTWLKILEKMLRKCSY-DVTTCCKARAALDLLRERKdkFDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHGAC 113
                   89*********************.***************888778**********************6644.8************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ ++el++
    PEQU_34838 114 DYLLKPIRMKELRN 127
                   ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363924.0E-1411563IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23001.7E-4316141No hitNo description
SuperFamilySSF521722.85E-3516142IPR011006CheY-like superfamily
SMARTSM004481.5E-3117129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.83118133IPR001789Signal transduction response regulator, receiver domain
PfamPF000728.4E-2419128IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.65E-2720132No hitNo description
SuperFamilySSF466892.51E-17197257IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.3E-27199258IPR009057Homeodomain-like
TIGRFAMsTIGR015573.6E-22200253IPR006447Myb domain, plants
PfamPF002491.0E-6202252IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MESSSASARV ESFPIGLRVL VVDDDLTWLK ILEKMLRKCS YDVTTCCKAR AALDLLRERK  60
DKFDIVISDV NMPDMDGFKL LEHVGLEMDL PVIMMSVDGE TSRVMKGVQH GACDYLLKPI  120
RMKELRNIWQ HVYRKRAHEL KDLESHEIID DIQILRSGLE KFDDKLLVST SEMISLGKRK  180
DLDTREFSDQ DFYDSVTVKK ARVVWSIDLH KKFVNAVDQI GFDKVGPKKI LDLMNVPGLT  240
RENIASHLQK YRMYLSRIQK QNEVGDLAGN MQPDHSSENH SESVGCQNSR TIHENSGANS  300
YGQKTQNFHG QDIIQGFQES ELNKADLLPV KLKKEDVTTD VHFQKPKNAS QPEQMLPHSD  360
QKQDYASISK RNGWHGSVLL RQFMQYPKHD EPFSFLEHNS YSSQTQVPQI PLWQLQCPSL  420
VSVNSSIKKD ETKFDVKPSI ANCNGHLMKI LSKAVYEDDQ HSIQVEHANS KEFEAAYEHK  480
KLISLMEHHY EQSRVHDLIP PSIHLDTKNE ASLITSSEDL NHHSLHGFGF LDNVGFNGME  540
LHQLNGCASL TELQSNCYDE IEFNYEYWYD PLDYLLLDEG LFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-17199258463ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020596007.10.0two-component response regulator ORR26-like isoform X1
SwissprotQ5N6V81e-170ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLA0A2I0WFF70.0A0A2I0WFF7_9ASPA; Two-component response regulator ARR11
STRINGXP_008797265.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59003752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-117response regulator 11
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]