PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

PEQU_34613

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

SBP

Protein Properties

Length: 1040aa MW: 115334 Da PI: 8.1399

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_34613	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	126.4	1.1e-39	83	160	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ak+yhrrhkvCe hsk +++lv ++qrfCqqCs+fh l efDe+krsCrrrLa+hn+rrrk+q+ PEQU_34613 83 MCQVDACRTDLSNAKDYHRRHKVCELHSKVANALVGPQMQRFCQQCSKFHPLMEFDEGKRSCRRRLAGHNQRRRKTQP 160 6**************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	7.4E-32	77	145	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	30.975	81	158	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.35E-36	82	162	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	6.6E-29	84	157	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	4.14E-5	785	920	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.23E-4	786	920	No hit	No description
Gene3D	G3DSA:1.25.40.20	8.4E-6	825	921	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1040 aa Download sequence Send to blast
WSPKLWDWDS LKFTAKPSEV SPGAGVMKDG DATGQLLSRG VEEDSGTLTL KIGIEASAVE 60 ELVFKPNKRV RSGSPGSSAS YPMCQVDACR TDLSNAKDYH RRHKVCELHS KVANALVGPQ 120 MQRFCQQCSK FHPLMEFDEG KRSCRRRLAG HNQRRRKTQP EDASANILES AIHDEKVTRN 180 MDIVNLLAVL TRFQGKISCL HEYFFVLRIV SPFISVSPGN VVGNSSNMAS LPQRDRCLQI 240 SDKFANLPPA KATSKTQVKR DFDLNVSVAP QQSSCKQPPE ESENLSSPST MNLLAILSAA 300 LSSNPNTLTT LLHVSSDDSG NSKSNRACQD TVVNVNSHSK LARICSPVGG REFDFNVCSQ 360 VNSSEHPVQT ATPSLPLQLF RSDEDDSHSK LFSASKYPSS QSSNIMEDTS PSCSLRIAKR 420 LFTLQSASET KDESMVICRE ELVTAEAKTS SGRPSSLDPF KGPGRHSDNQ KVQNLTYCRS 480 YSFSSGSVHS PSNSRFDAPD RTGRIIFKLF DKDPSNLPGE LRTEILNWLS HSPSEIESYI 540 RPGCVVLSIY LCMSLMAWHE LEEDFLRQVD SLVNCSESGF WKNTRFLVRL SGRLASHRDG 600 KIRIIKSWRT FSGPELTSIS PIAVMGGQET TLILKGRNLS VPGTIIHCTS ERGYLSKDVG 660 PTYPGTINDD DSSSECFVLP EGPPYSYGRY FIEVERSFKG NSFPIIIADS AICKELRSLE 720 FVFNENVGTI GTGFQNQCLE NGRTQSREDV LHFLNELGWL FQRKCHIDTS FVAFSTLRFK 780 YLFSFAVERD FTALVEKLLD IVVERGAERD SIFHEPLELL ELQLLNRAVK RKCRKMSDML 840 LNYSVKNKIS KDSRVYLFPP NSPGPGGFTP MHLAASMQNA EAMVDALTND PQKANGLKCW 900 ASVLDDNGQT PAMCAASRNN HSYNMLVTRK LTDKENGRVS IMIGHEAISC MDESRRVTEP 960 PAKHGNGCVP ATMAVNSCAQ CAFAKSRPIR IALGRGLLRW PHTHSVLAIA AVCVCVCLFL 1020 RGTPWVGSVA PFKWENLDFG

Sequence ? help Back to Top

Protein Sequence Length: 1040 aa Download sequence Send to blast

WSPKLWDWDS LKFTAKPSEV SPGAGVMKDG DATGQLLSRG VEEDSGTLTL KIGIEASAVE  60
ELVFKPNKRV RSGSPGSSAS YPMCQVDACR TDLSNAKDYH RRHKVCELHS KVANALVGPQ  120
MQRFCQQCSK FHPLMEFDEG KRSCRRRLAG HNQRRRKTQP EDASANILES AIHDEKVTRN  180
MDIVNLLAVL TRFQGKISCL HEYFFVLRIV SPFISVSPGN VVGNSSNMAS LPQRDRCLQI  240
SDKFANLPPA KATSKTQVKR DFDLNVSVAP QQSSCKQPPE ESENLSSPST MNLLAILSAA  300
LSSNPNTLTT LLHVSSDDSG NSKSNRACQD TVVNVNSHSK LARICSPVGG REFDFNVCSQ  360
VNSSEHPVQT ATPSLPLQLF RSDEDDSHSK LFSASKYPSS QSSNIMEDTS PSCSLRIAKR  420
LFTLQSASET KDESMVICRE ELVTAEAKTS SGRPSSLDPF KGPGRHSDNQ KVQNLTYCRS  480
YSFSSGSVHS PSNSRFDAPD RTGRIIFKLF DKDPSNLPGE LRTEILNWLS HSPSEIESYI  540
RPGCVVLSIY LCMSLMAWHE LEEDFLRQVD SLVNCSESGF WKNTRFLVRL SGRLASHRDG  600
KIRIIKSWRT FSGPELTSIS PIAVMGGQET TLILKGRNLS VPGTIIHCTS ERGYLSKDVG  660
PTYPGTINDD DSSSECFVLP EGPPYSYGRY FIEVERSFKG NSFPIIIADS AICKELRSLE  720
FVFNENVGTI GTGFQNQCLE NGRTQSREDV LHFLNELGWL FQRKCHIDTS FVAFSTLRFK  780
YLFSFAVERD FTALVEKLLD IVVERGAERD SIFHEPLELL ELQLLNRAVK RKCRKMSDML  840
LNYSVKNKIS KDSRVYLFPP NSPGPGGFTP MHLAASMQNA EAMVDALTND PQKANGLKCW  900
ASVLDDNGQT PAMCAASRNN HSYNMLVTRK LTDKENGRVS IMIGHEAISC MDESRRVTEP  960
PAKHGNGCVP ATMAVNSCAQ CAFAKSRPIR IALGRGLLRW PHTHSVLAIA AVCVCVCLFL  1020
RGTPWVGSVA PFKWENLDFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-30	73	157	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	152	157	QRRRKT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020593156.1	0.0	squamosa promoter-binding-like protein 15 isoform X1
TrEMBL	A0A2H4H2B0	0.0	A0A2H4H2B0_9ASPA; Squamosa promoter-binding-like protein 5 (Fragment)
STRING	XP_008799143.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5456	38	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	squamosa promoter binding protein-like 14