PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_34544
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MIKC_MADS
Protein Properties Length: 192aa    MW: 22564.1 Da    PI: 10.2105
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_34544genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.12e-271059251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                ri+n +nrqvtfskRrng+lKKA EL vLCdae+ +iifsstgkly++ s
  PEQU_34544 10 RIDNITNRQVTFSKRRNGLLKKARELAVLCDAEIGLIIFSSTGKLYDFTS 59
                8**********************************************975 PP
2K-box775.1e-2681170998
       K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                  ++++ + +q+e++ L+++++nLq+++R+l+Ged++ Ls+keLq+Le+qLe+sl  i +kK+++l+++++el +k   +++e+++L k+l
  PEQU_34544  81 HANSELKIWQREATSLRQQLHNLQEKHRQLMGEDINGLSIKELQNLENQLETSLHAIQQKKEQILINEVQELNQKIALMHREKMELCKML 170
                 6788999*****************************************************************************998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.4E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.884161IPR002100Transcription factor, MADS-box
CDDcd002659.12E-44278No hitNo description
SuperFamilySSF554552.35E-33291IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-29323IPR002100Transcription factor, MADS-box
PfamPF003199.1E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-293859IPR002100Transcription factor, MADS-box
PfamPF014864.5E-2484170IPR002487Transcription factor, K-box
PROSITE profilePS5129714.54486176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MGRGKIEIRR IDNITNRQVT FSKRRNGLLK KARELAVLCD AEIGLIIFSS TGKLYDFTSS  60
SMKTVINRYN KAKQDHLQTM HANSELKIWQ REATSLRQQL HNLQEKHRQL MGEDINGLSI  120
KELQNLENQL ETSLHAIQQK KEQILINEVQ ELNQKIALMH REKMELCKML NLCRQENMEL  180
NKKVFIKDQT NH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-22176176MEF2C
5f28_B6e-22176176MEF2C
5f28_C6e-22176176MEF2C
5f28_D6e-22176176MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020572217.11e-130MADS-box transcription factor 23-like isoform X1
RefseqXP_020572218.11e-130MADS-box transcription factor 23-like isoform X2
SwissprotQ6EP497e-90MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A2I0WUR81e-111A0A2I0WUR8_9ASPA; MADS-box transcription factor 27
STRINGXP_008800745.12e-92(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61435130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.12e-83AGAMOUS-like 21
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]