PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

MYB_related

Protein Properties

Length: 88aa MW: 10107.7 Da PI: 9.7213

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_34075	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.4	7e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grWT eEde+lv+++++ G g+W++ ++ g+ R++k+c++rw +yl PEQU_34075 14 KGRWTMEEDEILVNYIAENGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.8E-24	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	22.78	9	65	IPR017930	Myb domain
SMART	SM00717	2.5E-11	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	7.3E-16	14	61	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.12E-21	15	88	IPR009057	Homeodomain-like
CDD	cd00167	4.99E-9	16	61	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.0E-7	65	88	IPR009057	Homeodomain-like
PROSITE profile	PS51294	7.03	66	88	IPR017930	Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 88 aa Download sequence Send to blast
MGRAPCCDKK GLKKGRWTME EDEILVNYIA ENGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRSDLKRGSI SKEEEEIIIK LHSTIGNR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor postulated to regulate the biosynthetic pathway of a flavonoid-derived pigment in certain floral tissues.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020593967.1	1e-57	myb-related protein P-like
Refseq	XP_020596073.1	3e-56	myb-related protein P-like
Swissprot	P27898	9e-49	MYBP_MAIZE; Myb-related protein P
TrEMBL	A0A096PZZ6	3e-49	A0A096PZZ6_MAIZE; MYB-related transcription factor (Fragment)
TrEMBL	A0A317Y7V1	3e-49	A0A317Y7V1_MAIZE; Myb-related protein P
TrEMBL	C5WMJ0	4e-49	C5WMJ0_SORBI; Uncharacterized protein
STRING	Sb01g037670.1	8e-50	(Sorghum bicolor)
STRING	GRMZM2G016020_P01	5e-50	(Zea mays)
STRING	GRMZM2G129872_P01	5e-50	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47460.1	1e-41	myb domain protein 12

Publications ? help Back to Top
Robbins ML,Sekhon RS,Meeley R,Chopra S A Mutator transposon insertion is associated with ectopic expression of a tandemly repeated multicopy Myb gene pericarp color1 of maize. Genetics, 2008. 178(4): p. 1859-74 [PMID:18430921] Sidorenko L,Chandler V RNA-dependent RNA polymerase is required for enhancer-mediated transcriptional silencing associated with paramutation at the maize p1 gene. Genetics, 2008. 180(4): p. 1983-93 [PMID:18845841] Robbins ML,Wang P,Sekhon RS,Chopra S Gene structure induced epigenetic modifications of pericarp color1 alleles of maize result in tissue-specific mosaicism. PLoS ONE, 2009. 4(12): p. e8231 [PMID:20011605] Rhee Y,Sekhon RS,Chopra S,Kaeppler S Tissue culture-induced novel epialleles of a Myb transcription factor encoded by pericarp color1 in maize. Genetics, 2010. 186(3): p. 843-55 [PMID:20823340] Morohashi K, et al. A genome-wide regulatory framework identifies maize pericarp color1 controlled genes. Plant Cell, 2012. 24(7): p. 2745-64 [PMID:22822204]