PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

WOX

Protein Properties

Length: 124aa MW: 14469.3 Da PI: 10.2125

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_33785	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.5	1.3e-19	32	92	3	57
--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 R+ +t +q+++L +l+++ r psae+++++++kl +++ ++V++WFqN++a+e++ PEQU_33785 32 ARWIPTGDQIRILRDLYYNygVRSPSAEQIQRISAKLrqygKIEGKNVFYWFQNHKARERQ 92 7***************878************************************97 PP
2	Wus_type_Homeobox	110.5	9.3e-36	30	94	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RW Pt +Qi+iL++ly+ G+r+P++e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+ PEQU_33785 30 SSARWIPTGDQIRILRDLYYnYGVRSPSAEQIQRISAKLRQYGKIEGKNVFYWFQNHKARERQKK 94 689*************9868***************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.67E-12	23	99	IPR009057	Homeodomain-like
PROSITE profile	PS50071	9.993	27	93	IPR001356	Homeobox domain
SMART	SM00389	2.1E-4	29	97	IPR001356	Homeobox domain
Pfam	PF00046	3.4E-17	32	92	IPR001356	Homeobox domain
CDD	cd00086	2.01E-4	33	94	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.5E-7	33	92	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010492	Biological Process	maintenance of shoot apical meristem identity
GO:0080166	Biological Process	stomium development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 124 aa Download sequence Send to blast
CLFMEPNCHS QPQEENGNPG KSSSFLCRQS SARWIPTGDQ IRILRDLYYN YGVRSPSAEQ 60 IQRISAKLRQ YGKIEGKNVF YWFQNHKARE RQKKRLTSDI ASSNNSNVIN SKYFVHTIVL 120 FLHT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). May induce shoot stem cells activity in order to maintain the stem cell identity (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00265	DAP	Transfer from AT2G17950	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020596671.1	1e-73	protein WUSCHEL-like
Swissprot	Q84VT7	3e-47	WUS_SOLLC; Protein WUSCHEL
TrEMBL	A0A2I0AD01	5e-46	A0A2I0AD01_9ASPA; Protein WUSCHEL
STRING	Solyc02g083950.2.1	1e-45	(Solanum lycopersicum)
STRING	GSMUA_Achr7P07430_001	5e-46	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12465	31	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17950.1	1e-36	WOX family protein

Publications ? help Back to Top
Reinhardt D,Frenz M,Mandel T,Kuhlemeier C Microsurgical and laser ablation analysis of interactions between the zones and layers of the tomato shoot apical meristem. Development, 2003. 130(17): p. 4073-83 [PMID:12874128]