PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_32783
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C2H2
Protein Properties Length: 359aa    MW: 40086.6 Da    PI: 8.3842
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_32783genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-052444323
                ETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                C++Cgk F r  nL+ H r H
  PEQU_32783 24 CEICGKGFQRDQNLQLHRRGH 44
                *******************88 PP
2zf-C2H213.70.0001998120123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC +C+k++  +s+ k H +++
  PEQU_32783  98 WKCDKCSKRYAVQSDWKAHAKVC 120
                 58*****************9987 PP
3zf-C2H210.70.0017128146523
                 TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                 dCg+ Fsr++++ +H   +
  PEQU_32783 128 DCGTIFSRRDSFITHRAFC 146
                 9**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.46E-72144No hitNo description
Gene3DG3DSA:3.30.160.602.9E-52144IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.4892244IPR007087Zinc finger, C2H2
SMARTSM003550.0762244IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802444IPR007087Zinc finger, C2H2
SMARTSM003553106393IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.0E-486118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.46E-793118No hitNo description
SMARTSM0035514098118IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
NLDPEAEVIA LSPKTLMATN RFLCEICGKG FQRDQNLQLH RRGHNLPWKL RQKSSKEPRK  60
RVYVCPEKTC IHHNPLRALG DLTGIKKHFC RKHGEKKWKC DKCSKRYAVQ SDWKAHAKVC  120
GTREYRCDCG TIFSRRDSFI THRAFCDALA EEAARISAAS NINNPASMTN IMNYPYFNEN  180
LTRPNLQPLP ASGLSFWMNQ DTNEGMVLPN LSPFNSAFLS CSNSEQLDCQ LNWIYNESKL  240
PDQNLSFKDS CNNSSLGSMP FLFSTQQERR MMPEQAPEMS ATTLLQKAAQ MGVVSSGGPS  300
VLAGLDMKSS LVGELLEGSH YSIQMYDIGG GRDGGGEITR DFLGVGVQAL CPSSVTGWI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-3794163372Zinc finger protein JACKDAW
5b3h_F3e-3794163372Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1329335GGRDGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00125DAPTransfer from AT1G03840Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020573432.10.0zinc finger protein NUTCRACKER-like
SwissprotQ9ZWA61e-120IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A2I0WHW00.0A0A2I0WHW0_9ASPA; Zinc finger protein MAGPIE
STRINGXP_008798275.11e-146(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44160.11e-109C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Muñoz-Strale D,León G
    Identification of two highly specific pollen promoters using transcriptomic data.
    Plant Physiol. Biochem., 2014. 83: p. 292-9
    [PMID:25208507]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]