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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_32051 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 149aa MW: 16857.4 Da PI: 10.2578 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 51.2 | 1.6e-16 | 13 | 56 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 ie k r v fskRr g++KKA ELS+L +a++ ++fs+ gk PEQU_32051 13 LIERKDSRLVCFSKRRSGLFKKARELSILSGAQIGALVFSPAGK 56 699999***********************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 20.296 | 4 | 56 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.2E-23 | 4 | 69 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.06E-20 | 5 | 66 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 1.44E-23 | 5 | 59 | No hit | No description |
PRINTS | PR00404 | 1.5E-14 | 6 | 26 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.3E-20 | 14 | 58 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-14 | 26 | 41 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-14 | 41 | 62 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MAGGGRKKTE LKLIERKDSR LVCFSKRRSG LFKKARELSI LSGAQIGALV FSPAGKPFVS 60 DAGEECWSTV RRRCQASSRW IARRESRRLE NESGELQLQT DEGNNILLNG LLVYSVREKN 120 FSSSRFSSVL KMYCPPSFLV FLEDDLVYV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020589966.1 | 1e-104 | MADS-box transcription factor 2-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1224 | 36 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 4e-16 | AGAMOUS-like 29 |