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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_31825 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | C2H2 | ||||||||
Protein Properties | Length: 232aa MW: 25832.7 Da PI: 9.4387 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.2 | 0.00012 | 34 | 54 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ C +sFs+ L H+r H PEQU_31825 34 CTECEMSFSSTKALFGHLRIH 54 66777**************99 PP | |||||||
2 | zf-C2H2 | 14.9 | 7.7e-05 | 178 | 200 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+ksFs+ L H r H PEQU_31825 178 HQCDKCDKSFSSGQALGGHKRAH 200 79************999999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.22 | 32 | 54 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.868 | 32 | 59 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 34 | 54 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.44E-9 | 34 | 54 | No hit | No description |
Pfam | PF13912 | 3.6E-5 | 34 | 56 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.44E-9 | 173 | 200 | No hit | No description |
SMART | SM00355 | 0.054 | 178 | 200 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.7E-11 | 178 | 201 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.7E-4 | 178 | 200 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.51 | 178 | 205 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 180 | 200 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MLESVEKKDI SLKIRTKLHR SEKNASSSLS CNDCTECEMS FSSTKALFGH LRIHRKSNRG 60 VGKHSLLRLG QAKKGEDVLA ACNLLEMRQL KSETAINDAK LGQLRWVCAK IERERRKKMK 120 ETVSKHSDNN LDITCRMVSL TPSMLALHEH SVDQRMTSNS NEGVKIMAEV GAMEVEMHQC 180 DKCDKSFSSG QALGGHKRAH YTGPPLCRPG RDGSLSAVAV AERVLVHHID LN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020596978.1 | 1e-171 | zinc finger protein ZAT1-like | ||||
TrEMBL | A0A2I0XAR7 | 6e-66 | A0A2I0XAR7_9ASPA; Zinc finger protein AZF2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56200.1 | 5e-08 | C2H2 family protein |