PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

PEQU_31249

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

C2H2

Protein Properties

Length: 198aa MW: 22341.2 Da PI: 7.3426

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_31249	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.7	9e-05	60	82	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H PEQU_31249 60 YTCSFCRREFRSAQALGGHMNVH 82 9********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.48E-6	57	86	No hit	No description
Pfam	PF13912	1.1E-5	60	83	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0061	60	82	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.219	60	87	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	62	82	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MNSAKDQIGY LLCARRNSLC RPQLPSFILP PSSNVSWEEQ AFARDSSGEL GGCVWPPRSY 60 TCSFCRREFR SAQALGGHMN VHRRDRARLK EASTHSCETD EDVLNIYPFS SDAPGLKVSV 120 RLEIGRENWK ADELGQGRVR DFCDGDEEIS IKKVKTDNLR MFKSEVNKLG HGPVELDLEL 180 RLGDSPKVKE SRSIIVIE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1njq_A	2e-14	55	82	2	29	superman protein
2l1o_A	2e-14	55	82	2	29	Transcriptional regulator SUPERMAN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020591504.1	1e-145	probable transcriptional regulator RABBIT EARS
TrEMBL	A0A2I0WN62	3e-88	A0A2I0WN62_9ASPA; Putative transcriptional regulator RABBIT EARS
STRING	GSMUA_Achr10P02390_001	2e-35	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7845	29	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37740.1	3e-28	zinc-finger protein 10