PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_30955
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB
Protein Properties Length: 322aa    MW: 35936.2 Da    PI: 7.178
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_30955genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.29.4e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg WT+eEd +l  +++q+G+++W++I++  g+ R++k+c++rw +yl
       PEQU_30955 14 RGQWTPEEDNKLSSYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYL 61
                     89********************************************97 PP
2Myb_DNA-binding38.13.6e-1270122446
                      S-HHHHHHHHHHHHHTTTT...........-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGgg...........tWktIartmgkgRtlkqcksrwqk 46 
                      +++ E++ +v+++   G++            W++Ia+ ++ gRt++++k++w++
       PEQU_30955  70 FSEPEEQTIVKLHSVVGNRhvkvyilifvmEWSLIAAQLP-GRTDNDVKNHWNT 122
                      8999************************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-24564IPR009057Homeodomain-like
PROSITE profilePS5129426.476965IPR017930Myb domain
SuperFamilySSF466895.5E-2512120IPR009057Homeodomain-like
SMARTSM007176.0E-141363IPR001005SANT/Myb domain
PfamPF002493.1E-171461IPR001005SANT/Myb domain
CDDcd001674.24E-121761No hitNo description
Gene3DG3DSA:1.10.10.601.4E-1965128IPR009057Homeodomain-like
PROSITE profilePS5129412.30666128IPR017930Myb domain
SMARTSM007173.5E-666126IPR001005SANT/Myb domain
PfamPF002493.5E-1069122IPR001005SANT/Myb domain
CDDcd001672.19E-769124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MGRIPCCEKD SVKRGQWTPE EDNKLSSYIA QHGTRNWRLI PKNAGLQRCG KSCRLRWTNY  60
LRPDLKHCEF SEPEEQTIVK LHSVVGNRHV KVYILIFVME WSLIAAQLPG RTDNDVKNHW  120
NTKLKKKLSG MGIDPVTHKP FSHLMAEIAT TLAPPQVAHL AEAALGCFKD EMLHLLTKKR  180
IDFSSNRVVG GHSTPFLPPH PSGELALVGD VNGEETIRKI KMGLSRAIMQ EPSPVMGWGA  240
MAGSEPDAND LMCEMYKMAI GHGYGYEDGE GSKWSTCTVG GHLLKREEES ERDKGGSKED  300
AGVVGSECVL WDLSDDFMNH MV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24141287108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential for tapetum development in anthers and microsporogenesis. May regulate the timing of tapetal programmed cell death (PCD) which is critical for pollen development. {ECO:0000269|PubMed:22086333}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00564DAPTransfer from AT5G56110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020593063.10.0transcription factor MYB80
SwissprotQ7XQN11e-113MYB80_ORYSJ; Transcription factor MYB80
TrEMBLA0A2I0VKQ61e-172A0A2I0VKQ6_9ASPA; Myb-related protein Zm38
STRINGXP_008813758.11e-143(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108673339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.11e-112myb domain protein 103