PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

PEQU_30651

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

M-type_MADS

Protein Properties

Length: 127aa MW: 15031.4 Da PI: 9.6956

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_30651	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	26.6	7.7e-09	15	51	7	43
HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 7 snrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 + r t+ R g+ KKAeE+ LC+++v+v s++ PEQU_30651 15 RDRRSTYMTRWRGLKKKAEEIFFLCGVDVLVASRSPE 51 56889************************99777765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.1E-5	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	15.18	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.01E-14	1	68	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.5E-5	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.7E-8	12	51	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.5E-5	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.5E-5	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
MGRAKLQIKY REHVRDRRST YMTRWRGLKK KAEEIFFLCG VDVLVASRSP EFNTVEFWSE 60 KDTPGFRRIR ERCLCLHKKS DEGSGNSVEQ IPCLPMSSSS FSTTLFHEEM VAMEIKQKEI 120 RERLHFL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020599766.1	4e-67	uncharacterized protein LOC110039147
TrEMBL	A0A455LA52	2e-52	A0A455LA52_9ASPA; MADS-box protein-like protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26320.1	7e-09	AGAMOUS-like 33